KEGG   Chromobacterium sp. ATCC 53434: CXB49_14595
Entry
CXB49_14595       CDS       T05234                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
chro  Chromobacterium sp. ATCC 53434
Pathway
chro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:chro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CXB49_14595
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chro03021]
    CXB49_14595
   03019 Messenger RNA biogenesis [BR:chro03019]
    CXB49_14595
Transcription machinery [BR:chro03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CXB49_14595
Messenger RNA biogenesis [BR:chro03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CXB49_14595
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 NACHT AAA AAA_22 AAA_5
Other DBs
NCBI-ProteinID: AUH51962
UniProt: A0A2H5DY52
Position
complement(3273875..3275131)
AA seq 418 aa
MHLSDLKHLHVSELVEMAISNEIEGASRLRKQDLIFALLKNQAKKGESIFGEGTLEVLPD
GFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVN
GEAPENSKNKILFENLTPLFPTEQFKLEREIRAEENITGRIIDMVAPIGKGQRALLVAPP
KSGKTVMLQHIAHAITANHPEAVLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIVATALIDTGSRMDDVIYEEFKGTGNCEIHLDRRMAEKRIFPALNI
NRSGTRREELLVPQDQLQRIWVLRKLLYPMDDLEAMEFLQDKIKATKSNQAFFDSMRR
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgcacttatctgacctcaaacatcttcatgtttccgaactcgtggaaatggcgatttcc
aacgagatcgaaggcgccagccggctgcgcaaacaggatctgatcttcgcgcttctgaaa
aaccaggccaagaagggcgagagcatcttcggcgagggcacgctggaagtattgccggac
ggcttcggctttctgcgcagcccggacacctcgtatctggccggcccggacgacatctac
gtcagcccgtcccagattcgccgcttcaatctgcacaccggcgattcgatcgagggcgag
atccgcacgcctaaggacggcgagcgctacttcgcgctggtgaaggtggacaaggtcaac
ggcgaggcgccggagaattccaagaacaaaattctgttcgagaatctgacgccgctgttc
ccgaccgagcagttcaagctggagcgcgaaatccgcgccgaggaaaacatcaccggccgc
atcatcgacatggtcgcgccgatcggcaagggccagcgcgccttgttggtggcgccgccg
aagtccggcaagacggtgatgctgcagcatatcgcgcacgcgatcaccgccaaccacccg
gaagcggtgctgatcgtgctgctgatcgacgagcgtccggaagaagtgacggaaatgcaa
cgctcggtgcgcggcgaagtggtgtcgtcgaccttcgacgaaccggccacccgccacgtg
caggtcgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtc
gtgatcctgctggactcgatcacccgtctggcgcgcgcctacaacaccgtggtgccggct
tccggcaaggtgctgaccggcggcgtcgacgccaacgcgctgcaacgcccgaagcgtttc
ttcggcgccgcgcgcaatgtggaagagggcggcagcctgaccattgtcgccaccgcgctg
atcgataccggcagccgcatggacgacgtgatctacgaagaattcaagggcaccggcaac
tgcgaaatccacctggatcgccgcatggccgagaagcgcatcttcccggcgttgaacatc
aaccgctccggcacccgtcgcgaggagctgctggtgccgcaggaccagctgcagcgcatc
tgggtgctgcgcaagctgctgtacccgatggacgacctggaggcgatggaattcctgcag
gacaagatcaaggccaccaagtcgaatcaggccttcttcgattcgatgcgccgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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