KEGG   Capra hircus (goat): 102190587
Entry
102190587         CDS       T02910                                 
Symbol
PAN2
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
chx  Capra hircus (goat)
Pathway
chx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:chx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102190587 (PAN2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:chx03019]
    102190587 (PAN2)
Enzymes [BR:chx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     102190587 (PAN2)
Messenger RNA biogenesis [BR:chx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102190587 (PAN2)
  mRNA degradation factors
   3'-5' decay
    Pan complex
     102190587 (PAN2)
SSDB
Motif
Pfam: PAN2_N UCH_1 RNase_T UCH WD40_like
Other DBs
NCBI-GeneID: 102190587
NCBI-ProteinID: XP_005680407
EnsemblRapid: ENSCHIG00000026935
Position
5:56390729..56404719
AA seq 1205 aa
MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPTLERYSSFQVNGSDDIR
QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDESEDMHSLLLTDSSTLLIGGLQNHILE
IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS
DFDVHGNLLATCGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTADTLLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDNFSQVTESPIGREE
EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP
VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADS
DEASGKGNLARLIQRWNRFILTQLHQDLQELEVPQAYRGAGGSSFCSSGDSVIGQLFSCE
MENCSLCRCGSETVRASSTLLFTLSYPEGSNSDKTGKNCDFAQVLKRSICLEQNTQAWCD
NCEKYQPTIQTRNIRHLPDILVINCEVNSLKEADFWRMQAEVAFKMAIKKHSGEISKNKE
FALADWKELGSPEGMLMCPSIEELKNVWLPFSIQMKMTKNKGLDVCNWTDGAEMQWGPAR
AEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEVSEGVTHQQWYLFNDFL
IEPIDKHEAVQFDMNWKVPAILYYIKRNLNSKYNLNIKNPIEANVLLAEASLARKQRKTH
TTFIPLMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQG
PNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGV
KFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSI
EDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKSAAVFS
SVLAL
NT seq 3618 nt   +upstreamnt  +downstreamnt
atgaacttcgagggtctggaccctggactggcagagtatgccccggcaatgcattctgcc
ctggatcctgtcctggatgcccacctgaacccgagtctgctacagaacgtggagctggac
ccggagggagtggccctagaggctcttccagtccaggagtcagtgcacataatggaaggt
gtctactctgagttgcacagtgtggtggctgaagtgggtgtgcctgtctccgtctcccac
tttgacttgcacgaggagatgctgtgggtgggaagccatgggggccatgccacatcattt
ttcggcccaactttggagcgctactcatcatttcaggtcaatggcagtgatgacatccgc
cagatccagagcctggagaatggtatcctttttcttaccaagaacaacctcaagtatatg
gcccgaggaggcctcattatatttgattacctgctggatgagagtgaagacatgcacagc
ctgttgctgacagacagcagcactctgctcattggtgggctgcagaaccacatactagag
attgacctgaacactgtccaggagactcagaagtatgcagttgagacacctggagtcact
atcatgagacagacgaatcgcttcttcttctgtggccacacatctggcaaggtttctctg
cgagatctccgtacttttaaggtggaacatgagtttgatgccttctcagggagcctgtcg
gattttgatgtgcatggcaacctgctggccacctgtggcttctccagccgccttactggt
cttgcctgtgaccgtttcctcaaagtttatgatctacgcatgatgcgtgccatcacacca
cttcaggttcacgtggatcctgccttcttacgcttcatccctacatatacttctcgtctt
gctatcatctcccagtcagggcagtgccagttttgtgagcccacaggcctggccaaccca
gcagacatctttcatgtgaatcctgtgggacctctgctgatgacgtttgacgtgtcagcc
agcaagcaggccctcgcttttggggattctgagggctgcgtgcacctctggactgattcc
cctgagccttccttcaacccgtactcccgtgagaccgagtttgctttgccctgtctcgtg
gactcactgccgcctctggactggagccaggacctactgcctctttccctcatccctgtc
ccgctgaccgctgacacgcttctctctgattggcctgctgccaactctgctccagctccc
aggcgagcaccccctgtggatgcagagattctgcgcaccatgaagaaggtgggcttcatt
ggctatgcacccaatccccgcaccaggctgcgaaatcagattccttaccgactcaaggag
tctgacagtgaatttgacaacttcagccaggtcactgagtcaccaatagggcgggaagag
gagccacatctccacatggtctctaagaagtaccgcaaggtgaccatcaaatactccaag
ctagggctggaggacttcgacttcaagcactacaataagacgctgtttgctggattggag
ccccacatccccaatgcctactgtaactgcatgatccaggtgctctatttcctggagcct
gtgcgttgtctaatccagaaccacctttgccagaaggagttctgcctggcctgcgagctg
ggcttcctcttccacatgttggacctctcccgaggcgacccctgtcagggcagtaatttt
cttcgagcattccgcaccattcctgaggcctcagcccttggtctgattttggctgactca
gatgaggcttcgggcaagggcaacctggccaggctcattcagaggtggaaccgcttcatt
ctcacgcaacttcatcaagatttgcaggagctggaagtaccccaggcttaccgaggcgct
ggaggcagcagcttttgctcatcgggggactctgtcattgggcagctgttcagctgtgag
atggaaaactgcagcctctgccgctgtggcagtgagaccgtgcgagcctcatccacactg
ctcttcacgctctcttaccctgagggtagcaacagtgataaaaccgggaagaactgtgac
tttgctcaggtgttgaagcgaagcatctgcctggagcagaatacacaggcctggtgtgac
aactgtgaaaagtaccagcccacgatccagacccgcaacatccgccatctgccagatatt
cttgtcatcaactgtgaggtgaacagtttgaaagaagctgatttctggaggatgcaggct
gaggttgccttcaagatggcaataaagaagcatagtggggaaatctccaagaataaggag
tttgctctggctgattggaaggaactaggcagtccagagggcatgctgatgtgtccctcc
attgaggagttgaagaatgtctggcttcctttctccattcaaatgaagatgaccaagaac
aaagggctggatgtttgcaattggactgatggggctgagatgcagtggggcccagccagg
gcagaggaggagcatggtgtctatgtgtatgacctgatggcaactgtggtacacatcctg
gactcacgcacagggggcagcctggtggctcacatcaaagttggagagacctaccaccag
cgcaaggaggtgagtgagggtgttacccaccagcagtggtatctcttcaacgactttctc
attgaacctatcgataagcatgaagctgtgcagtttgacatgaattggaaagtgcctgct
atcctttattacatcaaaaggaatcttaattccaaatacaacctgaacattaagaatcct
attgaggcaaatgttctgctggctgaagcctcattagcacggaagcagcggaaaacacat
actacttttattcccctgatgctgaatgagatgccacaggttggggacttggtgggcctg
gacgctgagtttgtcacccttaatgaggaagaagcagagctgcgcagcgatggcaccaag
tctaccatcaagccaagccagatgtcagtggcgaggattacctgcgttaggggccaggga
cccaatgagggtatccccttcattgatgactacatctctacccaggagcaggtggtggat
tacttgactcagtactcagggataaagccaggagaccttgatgccaagatttcctctaag
cacctcacaactctaaagtctacctacttaaagcttcgttttctcatagacattggagtc
aagtttgtgggtcacggtctccaaaaggacttccgggtcatcaacctcatggtgcccaag
gaccaagtccttgacactgtttatctatttcacatgccccggaaacgaatgatttccctg
cgattccttgcttggtactttctagacctgaagattcaaggggagacccatgacagtatt
gaggatgcccgcacagcccttcagctttaccgaaagtatctggagctaagcaaaaatggc
actgaacctgagtccttccacaaagttctcaagggcctttacgagaaaggtcgaaagatg
gactggaaggtgcctgagcctgagggccagacaagtcccaagagtgcagctgtcttctct
tcagtgctggcactctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (11)   
   RefSeq(pep) (11)   
DNA sequence (15)   
   RefSeq(nuc) (11)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (42)   

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