KEGG   Citrus x clementina (clementine): CICLE_v10007378mg
Entry
CICLE_v10007378mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CICLE_v10007378mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cic03041]
    CICLE_v10007378mg
Enzymes [BR:cic01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CICLE_v10007378mg
Spliceosome [BR:cic03041]
 Complex C
  Other components
   Step II factors
    CICLE_v10007378mg
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N Helicase_C DEAD AAA_22 AAA_19 nSTAND3 ABC_tran AAA_30 Sigma54_activ_2 TsaE T2SSE AAA_16 SRP54 PhoH Helicase_RecD DAP3 Flavi_DEAD AAA_33
Other DBs
NCBI-GeneID: 18055842
NCBI-ProteinID: XP_006451105
UniProt: V4UJC5
Position
Unknown
AA seq 942 aa
MALDNGIRELTYLSLLSKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYGA
DLPNYLVRTLFNVIHTILHPKPKLQSKKKSGRDRKTNYKAEFENDRERSGRYCKSNPPML
KDMPVSRMGGVSGVLASNEYPRYDEEEEEGFASWAEGDEEELEIELSEDQPAFLQGQTRV
SVDLSPVKVFKNPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWEDPMPE
TGERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQ
AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC
RLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV
LFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQVVTDY
LDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSAL
PSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVI
TPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMG
INNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLAS
VDLGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDHLTLLAVYEAWKAKN
FSLPWCGENFVNSRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAA
RKDPQEGYQTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTKEYMREVIAIDPRWLADL
APKFFKVADPTKISKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq 2829 nt   +upstreamnt  +downstreamnt
atggccttagacaacggcattagagaactaacgtatctttccctgctatctaaaatttgt
tccgagttagaaactcatctgggttttattgacaaagtattagccgagtttatctccgag
tcaggccgtaattctgaaaccgtagagatatttgatgataaattgaaagaatacggtgcc
gatttgcctaattatcttgtccgcacgctgtttaatgtcattcataccattcttcatccc
aaacccaaattgcaatcaaagaaaaagagtggtcgtgatcggaaaacaaattataaggct
gagtttgagaatgatagagaaagaagtgggagatattgtaagagtaatccgccgatgttg
aaggatatgccggtgagtaggatgggaggagtttcaggggttttggcttccaatgagtac
cctaggtatgatgaggaagaagaggaggggtttgcttcttgggcagagggtgatgaggaa
gaacttgagattgaactgagtgaggatcagcctgcttttctacaggggcagaccagggtt
tctgtggatttgtcaccagtgaaggtcttcaaaaatcctgaggggtcattgagtcgtact
gctgcactccaatcagctcttacaaaggaaaggagagaagtgagggaacaacagctgagg
acaatgattgattccataccaaaggatctaaatcgtccttgggaggacccaatgccagag
actggtgagaggcatctagcacaggagctcaggggtgttggtttatctgctcgtgacatg
cctgaatggaagaagaatgcatacgggaaagcattcacttttggacaaaggtcaaagctc
tccatccaggaacagaggcggagcttgccaattttcaaattgaagaatgaactaatccag
gctgttcatgataaccaggtcctaatactcattggtgagactggttcaggtaagacaacc
caattggcacagtatcttgcagaggctggttacactacgaagggcaagattggatgtacc
cagccccgtagggtggctgcaacttctgtggccaagagggttgctgaagagtttggctgt
cgtttgggagaggaggttggttatgccattcgatttgaggattgtactggaccagatact
gtgatcaagtacatgactgatgggatgttgcttagggagattttgattgatgagaatctt
tctcagtattctgtcattatgctcgatgaagctcatgagaggacaatcaacactgatgtt
ctttttgggttacttaagcagcttgtgaaacggagacctgacctacgcctgattgtcaca
tctgccacgttggatgcagagagattttcgggatatttcttcaactgcaacatcttcagt
attccagggagaacatttccagttgatataaactactccagacaggtggtaactgattat
ctagattcagcattgatcacagtcttgcagatccacgtcgatgaacctgaaggtgatatt
cttcttttcttgacgggtcaagaggagatagattttgcatgtgagtcgctttgcgagaag
attaaagccctgggtaaagatgttcctgaactggttgttttaccagtttacagtgcgctg
ccaagtgaaattcaatcaagaatatttgaacctgcccctccaggggggaggaaagtggtt
gtggccactaacattgctgaggcttctttgactattgatgggatattttatgttattgat
cccggctttgcaaagcaaaatgtctataatccgaagcaaaggcttgattcactggtcata
actccaatttcacaagcatcagccctgcaacgagctgggcgtgctggccgtactgggcct
ggaaaatgttaccgcttgtacacagagagtgcatatcgcagtgagatgtcccctactaca
attccagaaatccaaaggattaatcttgtacatactaccctcactatgaaggctatggga
atcaataatctgctgtcttttgattttgtggatcctccatctccccaagctcttatttct
gccatggagcaattatacagtcttggagctctggatgaggagggacttctgactaaatta
ggtaagaaaatggcagaatttcccctagatccgccattatcaaagatgctgctagcaagt
gtagaccttggttgcagtgatgagatattaacgatcatcgccatgattcaaactggccat
atcttcaccagacccagggaaagacaggctaaagcagatgaaaaaagagccaggtttttc
cagcccgagggagatcatttgaccttgcttgcagtgtatgaggcttggaaagccaagaac
ttttctttgccttggtgtggtgagaactttgttaactctcgatctttgaagaaggcacag
gatgtgagaaagcaacttctggccatcatggataaatataagttgggcgttgtcagtgct
ggaaaagatttcctgaagataaggaaggccattacttctggattcttttttaatgcagct
agaaaggacccacaggagggctatcagactcttgtcgagaaccagccggtttatatccac
cctagcagtgctctttttcaaagacagcctgattgggtcatttacaacgagttggtaatg
acaacaaaggaatacatgcgcgaggtaatagctatagatccaaggtggcttgcagacttg
gcaccaaaattcttcaaggtggcagatcccacgaaaataagcaagcgcaagcgtcaagaa
cgcattgaaccgctatatgatagatatcatgaaccgaattcttggcggttgagtaaaagg
cgtgcatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (32)   

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