KEGG   Citromicrobium sp. JL477: WG74_01140
Entry
WG74_01140        CDS       T04089                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cij  Citromicrobium sp. JL477
Pathway
cij03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cij00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    WG74_01140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cij03021]
    WG74_01140
   03400 DNA repair and recombination proteins [BR:cij03400]
    WG74_01140
Enzymes [BR:cij01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     WG74_01140
Transcription machinery [BR:cij03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     WG74_01140
DNA repair and recombination proteins [BR:cij03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      WG74_01140
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid Apocytochr_F_C Peptidase_M23 DUF6744 YqfD ApbA_C Blo-t-5
Other DBs
NCBI-ProteinID: ALG59623
UniProt: A0A8D3YVT9
Position
complement(233727..238070)
AA seq 1447 aa
MNELTKFTNQLAKPETFDEIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKVLERVLYFENYIVTEPGITPLERYQLMTEDELLEAQDEYGEDAFTAG
IGAEAVKHLLMDLDLEQEKADLLEELETTKSKLKPAKIIKRLKVVESFIESGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVERERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMERQEKTPEFIEDGDDKIEKLQRFA
DMSEIHYALETNAVTLHSKIITRVPQTDENGKVEMKRFVTTPGRMLIGECLPKNHKVPYD
IVNRLLTKKDIGDVIDEVYRHTGQKDTVLFADAIMTLGFRYAFKAGISFGKDDMEIPESK
EGMVEQTKSLVADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVADAMMDKIKSRPIDSDG
KEAQINSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFN
STHGARKGLADTALKTANSGYLTRRLVDVSQDCTIVVEDCKTNNSLDMRAIVQGGSVIAS
LAERILGRTLAEDAVNAATGEVIAKAGTLLDEPMVKAIEEAEVQVAKIRSPLVCEADQGV
CATCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLDSVSD
GKVVYRDMPTITDKKGRILSLARNGELAVIDKEGREREIHKVPYGTVLMHKDGEKVSEGD
RLAEWDPFSLPIITEQSGVVKFLDLVEGSTLEERVDDATGIAQRVVTENRATGRKKKEEL
RPRLTLFNEGSTDEENEAARYMLAPGTTLSVEDGQEVEAGDILARASREAAKTRDITGGL
PRVAELFEARIPKDNAIIAKISGRIEFVREYKAKRKIAIVPEEGEAVEYLVPKTKVIDVQ
EGDFVKKGDTLISGSPNPHDILDVLGVEALAEYLVNEIQEVYRLQGVKINDKHIETIVRQ
MLQKVEITDGGDTVLLPGEQVDLEEMNEVNSKLGRNKTPAQGKPVLLGITKASLQTRSFI
SAASFQETTRVLTQASVEGKRDSLIGLKENVIVGRLIPAGTGATMNRMRVTASSRDAALK
ASWKKAQEAILAAETAEEERKAELAQGPEAATGDDPLAKMEGATHGTDADAGEYLQTGED
EAGAAEE
NT seq 4344 nt   +upstreamnt  +downstreamnt
atgaacgaactgaccaaattcaccaaccagctcgcgaagcccgaaaccttcgacgagatc
cagatcggcatcgccagccccgagcgcatccgctcgtggtccttcggcgagatcaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcttgttctgcgcgcgc
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtcaccgtgaccaaggtccgccgcgag
cggatgggccacatcgaactggccgcgccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagctcaaggtgctcgagcgggttctctac
ttcgaaaactacatcgtcaccgagccgggcatcaccccgctggaacgctaccagctgatg
accgaagacgagctgctcgaagcgcaggatgagtacggcgaagacgccttcaccgccggg
atcggcgcggaagccgtcaagcacctgctgatggacctcgacctcgaacaggaaaaggcc
gacctgctggaagagctggagaccaccaagtccaagctcaagcccgccaagatcatcaag
cgcctcaaggtcgtcgagagcttcatcgaatcgggcaaccgccccgaatggatgatcctc
gaagtcgtccccgtgatcccgcccgagctgcgcccgctggtgccgctggatggcggccgt
ttcgcgacgtccgacctcaacgacctctatcgccgcgtcatcaaccgtaacaaccgcttg
aagcgcctgatcgagctgcgcgcgccggacatcatcgtgcgcaacgaaaagcgcatgctg
caggaatcggtcgacgcgctgttcgacaatggccgtcgcggccgcgtgatcacgggtgcc
aacaagcgtccactcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaaccttctgggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccg
gagctgaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccggctcgacgccaagggcctttccatgacgctcaagcaggccaagaag
tgggtcgagcgcgagcgcaaggaagtgtgggacatcctcgacgaggtgatccgcgagcac
ccggttctcctgaaccgcgcgccgacgctgcaccgtctgggcatccaggcgttcgagccc
gtgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgttcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctgagcctcgaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggtgctggggatctactacctgtcgatggaacggcaggag
aagacgcccgagttcatcgaggacggcgacgacaagatcgagaagctgcagcgcttcgcc
gacatgagcgaaattcactacgcgctcgaaaccaatgcggtgacgctgcactccaagatc
atcacccgcgtcccgcaaacggacgagaacggcaaggtcgagatgaagcgcttcgtcacg
accccgggccgcatgctgatcggcgagtgcctgccgaagaaccacaaggtgccctacgac
atcgtgaaccgccttctgaccaagaaggacatcggcgacgtgatcgacgaggtgtaccgc
cacaccggccagaaggacacggtgctgttcgccgacgcgatcatgacgctcggcttccgc
tacgcgttcaaggccggcatctccttcggcaaggacgacatggaaatccccgaatcgaag
gaaggcatggtcgaacagaccaagtccctcgtcgcggattacgagcagcagtatcaggac
ggcctgatcacgcagcaggaaaagtacaacaaggtgatcgacgcctggagccgttgcggc
gaccaggtggcggacgccatgatggacaagatcaagtcgcggccgatcgacagtgacggc
aaggaagcgcagatcaactcgatctacatgatgagccactccggtgcgcgtggttcgccg
gcgcagatgaagcagctcgcgggtatgcgcggcctgatggccaagccttcgggcgagatc
atcgaaacgccgatcatctcgaacttcaaggaaggtctgaccgtcctcgaatacttcaac
tcgacccacggggctcgtaagggccttgcggataccgcgttgaagaccgccaactcgggc
tacctcacgcgtcgtctggtcgacgtgtcgcaggactgcacgatcgtggtcgaggattgt
aagaccaacaacagcctggacatgcgcgccatcgtccagggcggttcggtgatcgcatcg
ctggcagaacgtatcctgggccggaccctggccgaggacgcggtgaacgctgccaccggc
gaagtcatcgcgaaggcgggcactctgctcgacgagccgatggtgaaggcgatcgaagag
gccgaagtgcaggtcgccaagatccgctcgccgctggtctgcgaagccgaccagggcgtg
tgcgccacctgctacgggcgtgacctcgcccgtggtacgccggtgaacatcggcgaagcg
gtcggcgtcatcgcggcgcaatcgatcggtgagccgggcacgcagctgaccatgcgtacc
ttccacatcggcggtgcggcgcagctgaacgaaaccagccacctcgactcggtgtccgac
ggtaaggtcgtctatcgcgacatgccgacgatcaccgacaagaagggccgtatcctgtcg
ctcgcccgcaatggcgaactggcagtgatcgacaaggaaggccgcgagcgcgagatccac
aaggtgccctatggtaccgtgctgatgcacaaggatggcgagaaggtctccgaaggcgat
cgtctggcagagtgggatccgttctcgctgccgatcatcaccgagcagtcgggtgtggtg
aagttcctcgatctggtcgaaggctcgaccctggaagagcgcgtcgacgatgccaccggc
attgcccagcgcgtcgtgaccgagaaccgggcgacagggcgcaagaagaaggaagagctg
cgtccgcgtctcaccctcttcaacgaaggcagcaccgacgaggaaaacgaggctgcgcgc
tacatgctggcgccgggcaccacgctttcggtcgaggatggccaagaggtcgaagcgggc
gacatccttgcccgtgccagccgcgaagccgccaagacgcgcgacatcaccggcggtctg
ccgcgtgttgccgagctgttcgaagcgcgtattccgaaggacaacgcgattatcgccaag
atttccggacggatcgaattcgtccgcgaatacaaggcgaagcgcaagatcgcgatcgtt
ccggaggagggtgaagccgtcgagtacctggtccccaagaccaaggtcatcgacgttcag
gaaggcgacttcgtgaagaagggcgacaccctgatctcgggctcgcccaacccgcacgac
atcctcgacgtgctgggcgtggaagcgctggctgagtatctcgtgaacgagatccaggaa
gtctaccgactgcagggcgtgaagatcaacgacaagcacatcgagacgatcgttcgtcag
atgctgcagaaggtcgagatcaccgatggcggcgacaccgtgctgctgccgggcgaacag
gtcgatctggaggaaatgaacgaggtcaactcgaagcttggccggaacaagacgcccgca
cagggcaagccggttctgctcgggatcaccaaggcctcgctccagacgcgttcgttcatc
tcggccgcgtcgttccaggagacgacccgcgtgctcacccaggcttcggtcgagggcaag
cgcgactcgctgatcgggctcaaggaaaacgtcatcgtgggccgcctcatcccggcgggc
acgggcgcgaccatgaaccggatgcgggtcaccgcgtcgagccgcgacgccgcgctcaag
gcttcgtggaagaaggctcaggaagcgatcctcgccgccgaaaccgcggaagaagagcgc
aaggccgaactggcgcagggtccggaagcggcgaccggagacgatccgctcgccaagatg
gaaggcgcgacccacggcaccgacgctgatgcgggcgaatacctgcagaccggcgaagat
gaagcgggcgctgccgaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (78)   
   KEGG ORTHOLOGY (1)   
   RefGene (75)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (99)   

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