KEGG   Coccidioides immitis: CIMG_01848
Entry
CIMG_01848        CDS       T01114                                 
Name
(RefSeq) exosome complex exonuclease Rrp40
  KO
K03681  exosome complex component RRP40
Organism
cim  Coccidioides immitis
Pathway
cim03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cim00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CIMG_01848
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cim03019]
    CIMG_01848
Messenger RNA biogenesis [BR:cim03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     CIMG_01848
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N
Other DBs
NCBI-GeneID: 4566549
NCBI-ProteinID: XP_001248077
UniProt: J3KK28
AA seq 261 aa
MSAPLILLPGDTVPSHLKTASNNSLKLGQNLHVLSHATSPIPITSTQAGLLLQDPKRNSV
NILTFPRRRYIPQPSDLVIAQIHHSSADYFHCTLSPHTPHVFLPQLAFEGATRKTRPQLK
SGELVYARVLSVGLGPGAEIELTCVNPATGKAEPGGLGPLNGGMVFDVSVGLAGRLMSPG
GSGGVVVLEELGKKLESLGGFEIAVGKNGRVWVDSSAGGEEGIKMIVAVGRCLREVDEEN
LEVGEQKKLVSRVLKQMGLGA
NT seq 786 nt   +upstreamnt  +downstreamnt
atgtcggctccgttaattctcctaccgggagacacggtcccaagccacctcaaaaccgcc
agtaacaactctctcaaactcggccaaaacctccacgtcttatcacacgccacatcaccc
atcccgatcacaagcacccaggctggccttctactccaagatcccaagcgtaattccgtt
aatattctcacctttccacgccgccgctacatcccgcagcccagcgatcttgttatcgct
caaatccaccactcaagtgccgattattttcattgcaccctctccccgcacacgccgcat
gttttcctcccacagttagctttcgagggcgccacgcggaaaacgcgcccacagttgaaa
agtggcgaattagtgtatgcgcgtgtgctgtcggtcggcttggggccaggcgctgaaatt
gagttaacatgtgtgaatcccgcgacaggcaaggcagagccgggtgggcttgggcctctg
aatggcggaatggtgtttgacgtttcggtgggtttggcggggagattgatgtctccggga
ggaagtggaggtgtcgtagtgttggaggagctgggaaagaaacttgaatcgcttgggggg
ttcgagattgccgtgggaaagaatggaagagtatgggtggacagttcggctggtggagaa
gaagggattaaaatgattgtcgcggttggcaggtgtctgagagaggtggatgaagagaat
ttggaggttggggagcagaagaagctggtttcgagggtccttaagcagatgggacttgga
gcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

Download RDF
DBGET integrated database retrieval system