KEGG   Coccidioides immitis: CIMG_08631
Entry
CIMG_08631        CDS       T01114                                 
Name
(RefSeq) transcription factor Tfb2
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
cim  Coccidioides immitis
Pathway
cim03022  Basal transcription factors
cim03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CIMG_08631
  09124 Replication and repair
   03420 Nucleotide excision repair
    CIMG_08631
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cim03021]
    CIMG_08631
   03400 DNA repair and recombination proteins [BR:cim03400]
    CIMG_08631
Transcription machinery [BR:cim03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CIMG_08631
DNA repair and recombination proteins [BR:cim03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CIMG_08631
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 4560341
NCBI-ProteinID: XP_001241468
UniProt: J3K5W9
AA seq 487 aa
MPVSSSRPLEYLESLPGTVFLKLYQQPSTALAIFRRMLPHLAKCFVMALLYLKDPLPAAE
LELWVKAGSKRERDNALSILSRLHILSSTTTSDHVRAYMVTNPFSSSLRQALTGGDKQHS
FGVMSSMPDPHPMTVSDLDDYARRQWEGVLGYMVGTNSLGIQRENVTLSKGVKSLLQACH
LVEVRDRRVEITKEGFAFVLQDVNTQVWHILILYVENAEAIGMDSVEVLSFLFLLSSLEL
GQSYDKKHLTSTQLRTLADLTDFGIVYQHSPASESTRFYPTRLATTLTSDSMALSSSISG
NLAPAGPNINAATGAPGTGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKL
TRQSIRRAVEMGITADQIISYLTTHAHPQMRKVNASKSTSTTAGLLASVLPPTVVDQIRL
WQLERDRLKATPGFLFKDFASSAEFEAPCRYAEEIGVLVWKSEKRRMFFVTRHEQVAAFL
RSRASRS
NT seq 1464 nt   +upstreamnt  +downstreamnt
atgcctgtttcttcgtcccgtcctctagagtatctagagagccttccgggcacagtcttc
ctcaagctgtatcagcagccttcaaccgctctggcaatctttcgccggatgctgccccat
ctagcaaaatgttttgtcatggcccttctctacctcaaagaccccctgccagcagctgag
ctcgagctgtgggtcaaggcaggaagcaagcgcgagagagacaacgccctgtcgatcctt
agtcgattacacattctttcaagcactacaacgtcggaccacgttagggcgtatatggtg
accaatccattttcctcctctctgcgacaggcgctcaccggcggagacaaacaacattct
tttggagttatgtctagtatgcctgatccgcaccctatgactgtctccgatctagacgat
tatgccaggcgacagtgggagggtgttcttgggtacatggtcgggacaaactcgctgggc
attcaacgtgaaaacgtaacgctgagtaaaggagtcaaatccctcctccaagcctgccac
cttgtcgaggtccgagatcgcagagtggaaatcaccaaggaagggtttgcctttgtattg
caagatgtcaatactcaggtctggcatattctcatcctctacgtcgagaacgccgaagcc
atcggaatggatagcgtcgaggtgctctcctttctcttcctcctcagtagcttggagcta
gggcaatcctacgacaaaaagcatctaacttcaacgcaactccgtacccttgccgacctc
actgatttcggaatcgtttaccaacattcccctgcttcggaatccacacgcttttaccct
actcgattggcaacaacgcttacatccgactccatggctctctccagctcgatctcaggc
aaccttgctccagctggtccaaacataaacgccgctactggtgcgccaggcacaggattc
ataatcatcgaaacaaactaccgcttatacgcgtatacctcttcccctcttcaaatttcc
ctcatcgcactcttcacaacacttaaataccgctttcccaaccttgttacgggaaagcta
acacgccaatccatccgtcgcgccgtcgaaatgggcatcactgccgaccaaataatatct
tacctcacgacccatgctcacccccagatgcgaaaagtaaacgcatcaaagtccacttca
accacagctggacttcttgcgtctgttctaccgcccacagtcgttgatcaaatccggctc
tggcagttagaacgtgataggctgaaggccacaccaggatttttgttcaaagatttcgca
tcttcggcggagtttgaagccccgtgccggtacgcagaggaaatcggtgttttagtttgg
aaatcagagaaacgaagaatgttctttgtcacgagacatgagcaagtcgccgcttttttg
agaagtagagcctctagaagttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (27)   

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