KEGG   Coccidioides immitis: CIMG_10247
Entry
CIMG_10247        CDS       T01114                                 
Name
(RefSeq) WD repeat protein
  KO
K12880  THO complex subunit 3
Organism
cim  Coccidioides immitis
Pathway
cim03013  Nucleocytoplasmic transport
cim03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CIMG_10247
  09122 Translation
   03013 Nucleocytoplasmic transport
    CIMG_10247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cim03019]
    CIMG_10247
   03041 Spliceosome [BR:cim03041]
    CIMG_10247
Messenger RNA biogenesis [BR:cim03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CIMG_10247
Spliceosome [BR:cim03041]
 Complex C
  Other components
   EJC/TREX
    CIMG_10247
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CIMG_10247
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 Cytochrom_D1 eIF2A PALB2_WD40 Nup160
Other DBs
NCBI-GeneID: 4557840
NCBI-ProteinID: XP_001239225
UniProt: J3K139
AA seq 359 aa
MPPPPPSQLIPKDRFGYLFGRLRTQSYTDPNARGPGSHSIRTLAWNPTGLLIATGSADRT
LRIWNPERPDVRYSTELRGHTSGIEQVAFNPVKESELASCSTDGTVRFWDVRSKNCVNRI
DVGGEAFTLSWSADGSVLLAGRMDDTLVPISVDSSSTPTNTTEPSKSGTTAAPYKSLSPH
KQPVRTNGTAFSYSPSNPDLFLTTGDGTVQIVSYPSFHTLHTLNAHTASCHCVSLSPTAR
YLAIGGGDSLISLWDTTDWICKRTVTSSGGGGVRGVSWSWDGRFIVGACDEPDCGGVGLE
IFHAETGESVFTIPVDGSHVVPAVAWHPSRYWLAYSIYADAMGPSSNGLRIVGAGGGGL
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgccgcctcctcctccgtcccagctgatccccaaggatcgctttggctacttgtttggt
agactgagaacacagagctataccgatcccaatgcgcgtggacctggctcgcacagtatt
cgcactctggcatggaatcctaccggccttctcatcgcgacaggttctgccgaccgaaca
ctacgaatttggaacccagagcgccccgatgtgagatattcgactgagctacgcgggcat
acctctggcattgagcaggttgcttttaaccccgtcaaggaatccgagctagcgagctgc
tcaaccgatggaaccgtccgtttctgggacgtgcgatccaagaactgcgtgaaccgcatc
gatgttggcggagaagcattcactctctcctggtccgctgatggcagcgtgctcctcgca
ggaagaatggacgacactctcgtacccatctctgtcgactcttcctccacacctacaaac
accactgaaccctccaaatcgggtacaacagcggctccctacaaatccctttcgcctcac
aaacaacccgtccggaccaacggcaccgcattctcctactcaccctcgaacccggacctc
ttcctcaccaccggcgacggcaccgttcaaatcgtatcctacccctccttccacacactt
cacaccctcaacgcccacaccgcctcctgccactgcgtctccctctccccaacagcccgc
tacctcgcaattggcggtggagactccctaatctccctctgggacaccactgactggatc
tgcaagcgcaccgtgacgagttccggcggaggcggagtgcgcggcgtaagctggagctgg
gacgggcgattcattgtaggcgcgtgcgatgagccggattgcggcggtgttgggttagag
attttccatgcggagaccggggagagtgtgtttacgattccggttgatgggtcgcatgtt
gttcccgctgtggcgtggcatccgtcgaggtattggttggcgtattctatttatgcagat
gcgatgggcccgagtagtaacgggttgagaattgtaggtgctggtggtggtggattgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (28)   

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