KEGG T01056: 100178056

Ciona intestinalis (sea squirt): 100178056

Entry

100178056 CDS T01056

Gene name

sf3b3

Definition

splicing factor 3B subunit 3-like

Orthology

K12830

splicing factor 3B subunit 3

Organism

cin Ciona intestinalis (sea squirt)

Pathway

cin03040

Spliceosome

Class

Genetic Information Processing; Transcription; Spliceosome [PATH:cin03040]

SSDB

Motif

Pfam:

CPSF_A MMS1_N

Other DBs

NCBI-GI:

198420618

NCBI-GeneID:

100178056

UniProt:

F6SXA4

Position

AA seq 1216 aa
MFLYGLTLQRATTIIHAVHGNFSGTKQQEIAVSRGKLLELLKPDPNTGKVHTLITVEVFG
EIRSLMSFRLTGGNKDYVVCGSDSGRISILEYIPNKNKFEKIHLETFGKSGCRRIVPGQY
LAIDPKGRAVMIGALEKQKLVYILNRDSQARLTISSPLEAHKANTFVYHMVGIDVGFENP
MFACLELDYEEADTDPTGEAVQNTQQTLTFYELDLGLNHVVRKYSEPLEERANHLISVPG
GNDGPGGVLVCAENYITYKNFGDQPDIRTPIPRRRNDLDDPERGMIVVCSATHKTKSMFF
FLIQTEQGDIFKVTLETDEDMVTEIRLKYFDTVPVSMAMCVLRTGFLFVAAEMGNHCLYQ
IAHLGDDDDETEFSSAMPLEEGDTFFYAPRALRNLVLVDELDSLSPIMTCLISDLANEDT
PQLYVTCGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKIKEEEEFDSYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGENALVQVYPDGIRHIRADKRVNEWKTPG
KKTILRCAVNQRQVVIALTGGELVYFEMDQSGQLNEYTERKEMNSEVVCMDLSKVPPTEQ
RTRFLAVGLADNTVRIISLDPTDCLQPLSMQALPATPESVCIIEIGGGEDETGAQKASGG
LVLNIGLQNGVLLRTTLDNVTGDLSDTRTRYLGTRAVKLFRVLTQGSDAVLAMSSRTWLS
YQHQNRFHLTPLSYESLEFASGFASEQCPEGIVAISANTLRILALEKLGTVFNQASTGLQ
YTPRRFAIHYDSGNVIILETDHNAYTEETKENRKQQMAEEMIEAAGEDERELAAEMTAAF
LRESLPEDKFGASKAGPGMWSSQIRLMHPRSGETIQKICLEQNEAALSIAICKFPNNSDD
TFVLVGVACELLINPRQARGGGEIHTYKINEEGNKLELVHKTVVDEVPSAICPYQGRVLI
GVGKLLRIYDLGKKKLLRKCENKHIPNYIASIQAVGHRIIVCDVQESVHWVRYRRHENQL
VVFADDTYPRWVTSATVLDWNTVAVSDKFGNISVLRLPSDVNDDVQDDPSGTKALWTRGI
LNGAMQKCEVLCMYHVGETVLSLQKTTLIPGGSESLVYTTLSGSIGMLVPFTSHEDHDFF
QHLEMHMRNECPPLLGRDHLAYRSYYFPVKNVIDGDLCELFNSMEASKQKSVAEELDRVP
SEVSKKLEDIRTRYAF

NT seq 3651 nt +upstreamnt +downstreamnt
atgtttttgtatgggctgactctgcaaagagctaccaccattattcatgcagtccatggc
aacttttcggggacaaaacagcaggaaattgccgtttccagagggaaactgctggagttg
ttgaagccagatccaaacacagggaaggtgcacacactcatcactgttgaggtgttcgga
gaaattcgttctttgatgtcgttccgcttgactggaggcaacaaagattacgttgtgtgc
ggttcagattctggaagaatttctatccttgaatatattccaaataaaaataaatttgaa
aagattcacttggagacttttggtaaaagtggatgcagaaggattgtacccggtcaatat
cttgctattgatcccaaaggaagagctgtaatgatcggtgctttggagaagcagaagttg
gtttacattttgaatcgagactcacaagcaaggttgaccatctcgtctccgctcgaagct
cataaagcaaacacattcgtctaccacatggtggggatagacgtggggttcgaaaatcca
atgtttgcttgtcttgaacttgattatgaagaagcagataccgacccaactggcgaagct
gttcaaaatacacaacagaccttaaccttctatgagcttgaccttggtttaaaccatgtg
gttcgaaaatacagcgagcccctggaagaacgagccaatcatcttatatcagtgcctggt
ggtaatgatggtcccggtggtgtgttagtgtgcgcagagaactatatcacatacaagaac
tttggtgaccaacctgatattagaacccctattccaagaagaaggaatgatcttgatgat
ccagagcgaggcatgattgtggtatgcagtgcaactcataaaacaaagtcgatgtttttc
tttttaattcaaactgaacaaggagatatatttaaggtgacccttgaaacagatgaagac
atggtgaccgagattcgacttaaatattttgacactgttcccgtttccatggcgatgtgt
gtgttgagaactggtttcttattcgtggctgctgagatgggaaatcattgtttataccaa
attgctcaccttggagatgacgatgatgagacggagttctcgagcgcgatgccgttagag
gaaggagacacattcttctacgctcctcgtgcgctgaggaaccttgtgctcgttgacgag
ctggacagcttgtcaccaatcatgacttgcctgatatcagatcttgcaaatgaagacacc
ccacagttgtatgtaacttgtggtagaggtccacgttcatctcttcgtgttttaaggcac
gggcttgaggtttccgagatggctgtttcagaactacctggtaatccgaatgctgtgtgg
actgtaaagataaaagaagaagaggaatttgattcttacatcatcgtgtccttcgtcaac
gctacccttgtcctctctatcggagaaactgttgaagaagttacagattctggattctta
ggaacaactcccactctatcttgctcattgctgggtgagaatgcattggttcaggtttac
ccggatggtattcggcacatccgagctgacaagcgagtcaatgaatggaaaactccgggt
aaaaaaaccatcctgaggtgtgctgtcaatcaaagacaagttgtcatcgcacttactggg
ggggaacttgtatattttgaaatggatcagtcaggacaactgaatgaatacacggaacgt
aaagagatgaacagcgaggttgtgtgcatggatttatcaaaagttcctccaacggaacaa
agaacgcgatttcttgctgtcgggttggctgataatactgtccgtattatatctcttgac
ccaactgattgtttgcaacctctgagcatgcaagctcttcctgcaactccggagtcggtt
tgcatcattgaaatcggaggaggagaggatgaaacaggagcacagaaagcatccggagga
ttggtcctcaacattgggttgcagaacggggttttgcttcgaacaacgcttgataatgtg
acaggagatctctcggacacacgaacacgatatcttggaacacgggcagtcaaactgttt
cgtgtattgacacagggttcagatgcagtattagcaatgtccagcagaacatggttaagt
tatcaacatcagaacaggttccatctcacaccactatcttatgaaagcttggagtttgca
tcaggattcgcatcagagcaatgtccagaaggaattgttgcaatatctgccaacaccctc
aggattttagcattggagaagttgggcaccgtgttcaaccaagcgtccacaggacttcaa
tacacgccacgtagatttgcaatacattacgactcgggtaatgtcattatacttgagacc
gatcataatgcttacacagaagaaaccaaggagaacagaaaacaacaaatggcagaagaa
atgatagaggcagcaggtgaggatgagagagaactcgctgctgagatgaccgcagctttc
ctccgtgagagtcttccggaggataagttcggagcatcaaaagctggtcctgggatgtgg
tcatctcagatccgtctcatgcatccaagatctggcgaaacaattcaaaaaatttgtctg
gagcaaaacgaagcagcgttgagcattgctatttgtaagtttcccaacaacagtgacgac
acgtttgtgttggttggcgtggcttgcgaactccttatcaacccacggcaagcaaggggg
ggaggggagatacatacttataaaataaatgaagaaggaaataaactggaactcgtgcat
aagacagtagttgacgaggtgccgagcgcaatttgtccgtatcaaggtcgtgtcctcatc
ggggttggaaagttgcttcgaatctatgatcttgggaagaagaagttgttgaggaagtgt
gagaataagcacatccctaactacatagccagcattcaagctgttggtcatcgtatcatt
gtgtgcgatgtacaggagtctgtgcattgggtgagatatcgaagacatgaaaaccaactt
gtggtgtttgcggacgatacttacccacgatgggtcacgtcagctactgtgttggattgg
aacacagtggctgtgtccgataagtttggaaatatatctgtgctgcgtcttccatctgat
gtcaacgatgacgttcaagatgatcccagcggaaccaaagctttgtggacgagaggaatt
cttaacggagcaatgcagaagtgtgaggtgctatgcatgtaccatgttggggaaacagtt
ctatcactacagaagaccaccctcatacctggaggttcagaatccctcgtatacaccaca
ttatcgggtagtattggtatgttggtgccattcacatcacatgaggatcatgatttcttc
cagcatttagaaatgcacatgagaaatgaatgtccaccattattggggagagaccatctt
gcttatagatcatattactttcctgtcaagaatgttattgatggtgatttgtgtgaactc
ttcaattcaatggaggcttcaaaacaaaaatctgtagctgaggaattagacagagtccca
tctgaggtgtcgaaaaaacttgaagacattcgtacaagatatgcgttctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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