KEGG   Ciona intestinalis (yellow sea squirt): 100178637
Entry
100178637         CDS       T01056                                 
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34 isoform X1
  KO
K20101  ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cin03019]
    100178637
Enzymes [BR:cin01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100178637
Messenger RNA biogenesis [BR:cin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     100178637
SSDB
Motif
Pfam: Helicase_C OB_NTP_bind DEAD HA2_C AAA_22 AAA_19 nSTAND3 HA2_N AAA_16
Other DBs
NCBI-GeneID: 100178637
NCBI-ProteinID: XP_009862454
Position
1:7427304..7437854
AA seq 1135 aa
MDDFNWEFYRSELNKIFFHNESSIPNGSKKYEDFWMFFKRFRKYQAKHGLTNQPTESNTS
NCSERLGLPSCFSTRFKINCEVANFDEILEKRRHKSKKSTRPTDRYSEVDDGLTATRLKE
FHSGILHYLDFCQKQSFQKLKKLKTEQSNLPIAQYRERIVEAVKSSQVVIVAGDTGCGKS
TQVPQYLLRSGFTNIACTQPRRIAAISLSKRVGFETLNQYGSQVAYKIRFEGTKTSSTRI
LFLTEGLLLRQMQQDGNLAQYSVIILDEIHERHLQSDLLLGLLRNLISSGNTELRLVLMS
ATINLELFCKYFEDSPVIQVPGRLYPIQVQYHPISMEDKGNKSSKLDPRPYIRILQKIDK
KYPSSERGDLLIFLPGMQEITIIEEAAKAYAEETKNWIILPLHSTLSIEEQNKVFDIAPD
GVRKCILSTNIAETSVTVDGVRFVADSGRVKEMSFDAQFKMKRLQEFWVSRASAEQRKGR
AGRTGPGVCFRLYSEEDYEAFAEYSVPEIQRVPLDSLILQMKSMGIDDVRKFSFIEPPPE
SALNNAILGLKEQEALGRDEEISPLGEMLAQLPVDVAIGKMLIMGSLFDVIEPVMSVASV
LSVQSPYTRSAYNNPEMVARRRPIESTHGDPITLLNLFDEWIKVKAEGKASSRTWCKRRG
LEEQRFYEMANIKRQFTDLLRGNSLLSGEKESSHGGETSHKRKQRHADRKRLRQLKEEER
TESRKRKVLKMTDHKYVAVATDDASDADDDETVSLTTNVKDLEFKVRHDLDKLYKASSEE
RNFTLKDVILLKVILCSGLYPQLAFPDNCNSYTADSDQVFHTKNKLFVVLHPNSYFANHP
DILEPVGKDDDITEGKSSQRGLLSHKHQLLSYVSLLETTKPYLVNTMRVPTLQTLLLFSQ
SLDTDGGCKRIIVDEWIEICISDATQSQGIVASCLQLRTAWNQLLKLRINASKKEGLGST
RSTRNLQKFLGIKLPEFLDSKVEYKVRRITAADKKKLYVGPNINSEYSDEEIGNFAVKLS
QAVPHPSKGGIQLSPFLTYNCLSDGMNMGGDYLREFWTCPNCNVKLPLTVSERLRHQAVC
TGEENTEADCASTSQNEGSTAIPSLQKDYHCTVCNEMFKFSAVEILKHKRSHAKQ
NT seq 3408 nt   +upstreamnt  +downstreamnt
atggacgactttaactgggaattttacagatcagagctgaataagatattttttcacaat
gaaagttctattcccaatggttcgaaaaaatacgaagatttttggatgttttttaaaagg
tttcgaaaataccaggcaaaacatggacttacaaatcaaccaactgaatcaaacacaagc
aattgtagtgaaaggttgggtttgccaagttgttttagtacaaggtttaaaataaattgt
gaagttgcaaattttgatgaaattttggagaaacgtcgtcacaaaagtaaaaagtcgaca
agacccacagacagatacagtgaagtagacgatggtttaacagcaaccagactcaaggaa
ttccactcaggaattttacattatcttgatttctgtcaaaaacaaagttttcaaaagtta
aaaaaactgaaaactgaacaatccaatcttcccattgctcaatacagagagagaattgta
gaagctgtaaaaagctcacaggttgttatagtggctggtgacactgggtgcggaaaatca
acccaagttccacagtatttactaagatctggattcaccaatatagcttgtacacaacca
cgcagaatagcagcaatctcactttcaaaacgggttggatttgagacattgaaccagtat
ggttcacaagtggcgtacaaaattcggtttgaaggaacaaagacttcatcaacgagaata
ttatttctaactgaaggtttattactgcgacaaatgcagcaagatggaaaccttgctcag
tatagtgttataatattagatgagatccatgagcgtcacttgcagtctgatcttctcctt
ggtttgttgagaaatttaatttcttcaggaaacacagagttacgtctcgtgctgatgtcc
gcaaccataaaccttgagttattttgcaaatattttgaagactcgcccgtcattcaagtt
cctggacgactttatcctattcaagtgcaatatcatcctatttctatggaggacaaagga
aacaagtcaagtaaattagatcctcggccatatatccggatcttacagaagattgataaa
aagtatccgtcatcagaacgaggagatttgttgatttttcttccaggaatgcaggaaata
acaataatagaagaagctgccaaagcttatgcagaggaaacaaaaaactggataattctt
cctcttcatagtacattgtccatagaagagcaaaacaaagtgtttgatatagcaccagac
ggtgttagaaaatgcattttatcaacgaacattgccgaaacttctgtcacggttgacgga
gttcgtttcgttgccgattctggccgtgtaaaggagatgagcttcgatgctcagtttaaa
atgaaacgacttcaggagttctgggttagcagggcaagcgctgaacaaagaaaaggtcgt
gctggacgtaccggacctggtgtttgtttccgtctttattctgaggaagattacgaagca
tttgctgaatattctgtacctgaaatacaacgcgtgccacttgattctctgatactgcag
atgaagagcatgggaatcgatgatgtgcggaaattctcgtttattgaacctccaccagag
agcgctcttaacaatgcaatactcgggttgaaagaacaggaagcgttggggcgtgatgaa
gagatttctccactcggagaaatgttagctcagctgccagtagatgtcgctataggcaaa
atgttgatcatgggaagcttatttgacgttattgagccggtgatgtcagttgcttcggtt
ctcagcgttcaatccccttatacaaggtcagcatataataaccccgagatggtggcaagg
aggcgacccattgaatccacacacggagatcctataactttactcaatctctttgatgaa
tggattaaggttaaagctgagggcaaagcatcaagtcgtacttggtgtaaaaggcgggga
ttggaggaacaaagattttatgaaatggcaaatattaagaggcagttcaccgatttactt
cgaggtaattccttgttgtcgggtgaaaaagagtcgagtcatggtggggagacgagtcac
aaacgtaaacaacgacatgcagatcgaaaaagattacgtcagcttaaagaggaagaaagg
acggaatctcgcaaacgtaaagttttgaaaatgaccgatcataagtacgtcgccgtagca
accgatgatgcgagcgatgcagatgatgatgaaaccgtttccttgacgaccaacgtgaag
gatctagagtttaaagtccgacatgatctcgataaattgtacaaggcatccagtgaggag
cgtaactttactcttaaagatgtcatcttgttgaaagttattctatgttctggtctctat
ccccagctagcgtttcctgataattgtaattcctacacagcagattcagatcaagttttc
cacacaaagaacaaactttttgttgttcttcacccgaacagttacttcgcgaatcacccg
gatatccttgaacctgttggtaaggatgatgacatcacagagggcaaatcatcacaaagg
ggattgttaagtcacaaacatcagctcttgtcatatgtgtcactgctagaaacaaccaaa
ccttatttagttaacactatgagggttcctacccttcagactcttcttctattctcacaa
tcattggacacagatggcggatgtaaaaggataattgttgacgaatggattgaaatttgc
atctctgatgccacacaaagtcaaggcattgtcgcatcatgtttacaacttcgtactgct
tggaaccaacttttaaagttaagaattaacgcttcaaagaaagaaggcttgggttccact
cgttcaactcgaaaccttcaaaaatttcttggaataaaacttcctgaatttctcgattcc
aaagttgaatacaaagtacgaagaataaccgctgcagataaaaagaaactttatgtcgga
cccaacatcaattctgagtacagtgatgaagaaatcggaaattttgctgtaaaattatcc
caagctgtgcctcacccttctaaaggaggcatccagttatctccattcctgacatataac
tgcttgagtgatggcatgaacatgggtggggattacttgcgagaattctggacatgcccc
aactgtaatgtgaagcttcctcttacagtatcagagcggttacgccatcaagctgtttgc
actggagaagaaaatacagaggctgactgtgccagcacttcacagaatgaaggaagtaca
gcaataccttcactacagaaggactaccactgcactgtttgcaatgaaatgttcaaattt
tctgccgttgaaatcttaaaacacaaacgttcacatgcaaaacaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (87)   
   KEGG ORTHOLOGY (1)   
   RefGene (83)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (104)   

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