KEGG   Ciona intestinalis (yellow sea squirt): 100179094
Entry
100179094         CDS       T01056                                 
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
  KO
K14553  U3 small nucleolar RNA-associated protein 18
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    100179094
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cin03009]
    100179094
Ribosome biogenesis [BR:cin03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    100179094
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40 Peptidase_S31 WDR54
Other DBs
NCBI-GeneID: 100179094
NCBI-ProteinID: XP_026691882
Position
9:4135177..4137033
AA seq 505 aa
MRVKSIMRDIGYGQKKKCLILYKVQALSKLTVNMLRRAGKRAYTFEVGKTEEKNTNIKVE
RTSEDEDGSEKENDVLETAVFGGLVSVEPTKGAKENESDEESVEDSSQNALWSDEDDLVP
DTDTLIYNASKNKDKVISARQKQFEKTVGSTPTWAKAVNKKESSEYVTITASKYIADSHS
TLEPRTINLSKCVDLNKQQTSLQRLEGCEFHKDAQIALTASQDCRLNLFQVDGKTNAKIH
SLFMDKYPIRCAHFLANGSEILMSSNLKWLYSYDLISGTVQKIPYIKGIKDTKFTNFKVS
PDGKHLVFLSKFGKMHLVDARTKEAITSFKMNGSVSDIDFMSGGEKMLSIGDEGIVCIWD
IRMQKSVGMFTDEGCVNGTAIAASQNSSYFACGSYSGIVNLYDEQCLTKSTPQPLKSFMN
LQSPITTLKFNSTSEILAMASNYQHNAVKLVHTASLTAFTNFPDFSDKFIKLPRFVDFSA
NSGYMLLGNSHGRAYLYRLNHFKRY
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgagagttaagtcaatcatgcgtgacattgggtatggacagaaaaaaaaatgtcttatt
ttgtataaagtgcaagcattgagtaaacttactgtcaatatgcttagaagggcaggaaag
cgtgcatacacctttgaggttggtaagacagaagaaaagaacacgaacattaaagtggaa
cgaaccagcgaagatgaagatggctcggaaaaagagaacgacgtgttagaaactgcagtt
tttggtggtttagtttctgttgaaccgacaaagggggcgaaagagaatgaatctgacgaa
gaatcggttgaagattctagtcaaaacgctttatggtcagacgaagacgacttggttcca
gacactgatacgttgatttataatgcaagtaaaaataaagataaagttatatcagcaaga
cagaaacagttcgagaaaacagtagggtccacacctacctgggcaaaagcagtaaataaa
aaggaatctagcgaatatgttacaataactgcttccaagtatattgctgattcccattct
actttggagccaagaaccatcaacttaagtaaatgtgtggatctaaacaaacagcaaaca
tcattgcaaagattggaagggtgcgagttccacaaagatgcccagattgcactcactgct
tcccaggattgtagactcaatttattccaagtggatggcaaaacaaatgcaaaaatccac
agtttgtttatggataaatatccaattcgttgcgctcattttctggcaaatggaagcgaa
atacttatgtcttccaatctaaagtggctgtatagttacgacctaatttctgggactgtg
cagaagataccgtatatcaaaggaataaaggacaccaagttcaccaactttaaagtatct
cctgatggaaaacacttggtatttctttcaaagttcggcaaaatgcacctggtagacgca
agaacaaaagaggcaattacaagctttaaaatgaacggaagtgtttcagacattgatttt
atgagcggtggtgagaaaatgctttctattggagatgaaggaattgtctgtatttgggac
ataaggatgcagaaaagtgttggaatgttcacagatgaaggatgtgtaaatggaacagca
atcgctgcatcacagaacagttcttacttcgcctgtggatcttatagcggaatagtaaac
ttgtatgacgagcaatgtctcacaaaatcaacacctcaaccactcaaatcattcatgaat
ctacagtctccaattacaactctaaagtttaactcaacttccgaaattcttgcaatggct
tcaaattaccagcacaatgctgtgaaacttgtccatactgcgtcattgacagcttttacc
aattttccagacttttccgataaatttatcaaactgccacgttttgttgacttttcagcc
aacagcggttacatgcttttaggaaatagccacggcagagcttatctttatcggcttaac
cattttaaacgctattaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (48)   

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