KEGG   Ciona intestinalis (yellow sea squirt): 100183472
Entry
100183472         CDS       T01056                                 
Name
(RefSeq) F-box/WD repeat-containing protein 7 isoform X1
  KO
K10260  F-box and WD-40 domain protein 7
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100183472
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cin04131]
    100183472
   04121 Ubiquitin system [BR:cin04121]
    100183472
Membrane trafficking [BR:cin04131]
 Autophagy
  Mitophagy
   Other mitophagy associated  proteins
    100183472
Ubiquitin system [BR:cin04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Target recognizing subunit (F-box)
     100183472
SSDB
Motif
Pfam: WD40 F-box-like ANAPC4_WD40 NBCH_WD40 Nup160 F-box PQQ_2
Other DBs
NCBI-GeneID: 100183472
NCBI-ProteinID: XP_009860704
Ensembl: ENSCING00000001520 ENSCING00000010722 ENSCING00000022801
Position
14:26296..41909
AA seq 689 aa
MFGNKRGGEGDCNKRETRGKREKCSSSKSSNSAASSSSSDSSSDTKNMTRSRRLSDKPAD
SVGDTDINSVFSIGRITRGQMNRLKQISSESLNFELSGSVRLKNSKKSVVAGSSSDQTRK
FVMKRKHELDSEKSPEKKACKSIHGRSIVATRTAILPLASPVPHKAVTRTTSTRRTRLVS
DGSNSDAPPVESNGMITAPTTPTKVNQTPPGNNEWLQRFLQWNARDKIQVLENLIGVCQP
HEVRHMLEVIEPQFQRDFISLLPKELALYVLSFLQPQDLLIAAQTCKFWRILSEDNLMWR
EKCLEEGISEPYMTKIMRNNWKSKRSVGCGSTWKASFLRHARIEANWRSGNTKTPKLLKG
HDDHVITCLQFNGSRIVSGSDDNTLKVWSAISGKCLRTLTGHTGGVWASQMRKNLIISGS
TDRTLKIWNADTGLCVHTLYGHTSTVRCLALHDNIVVSGSRDATLRAWNIDTGECTHCLV
GHMAAVRCVCYDGERVVSGAYDYMVKVWDPETEECLHTLQGHTNRVYSLQFDGHYVVSGS
LDTSIKVWEIERGTCLHTLMGHQSLTSGMELRDNILVSGNADSTVKVWDILTGECLKTLE
GSNKHHSAVTCLQFYGKFVITSSDDGTVKLWDVKTGKVVRDLVTLDSRGSGGVVWRIRAS
QTKLVCAVGSRNGTEETKLLVLDFDSEPK
NT seq 2070 nt   +upstreamnt  +downstreamnt
atgttcggcaataaacgtggaggtgaaggtgattgtaacaaaagggaaactcgggggaaa
cgagaaaaatgttcgtcctccaaaagttccaactcagctgcttcttcaagctcctctgat
tcaagttctgatacaaaaaacatgacccgaagtagacgactgtcagataaacctgcagac
tcggtcggggacaccgacatcaactctgtgttttcaatcggacgtataacgcgtgggcaa
atgaatcgcttgaaacaaatatcttcagagagtttaaacttcgaactgagcggctctgtt
cggttaaaaaactcaaagaaatctgttgttgctggaagttcttcagatcaaaccaggaaa
tttgtgatgaaaagaaagcatgaactggattcagagaaatcacctgaaaagaaagcgtgc
aagtcaatacatggcagaagtatcgttgcaacacgaaccgccatccttccacttgcgtca
cccgttccacacaaagctgttacaagaacaacttcaacacggagaaccagacttgtatca
gatgggagtaacagtgatgctccgcctgtggaaagcaatgggatgatcacagcaccaacc
acgccaaccaaagttaaccaaacaccacctggtaataatgaatggttgcaaaggttcctg
cagtggaatgcccgcgacaagatccaagtgttggagaatttgatcggcgtgtgtcaacca
catgaagttagacatatgttggaagttattgaacctcagtttcaacgagattttatttca
cttttacccaaggagcttgcgctctatgtcctgagcttcctccaaccacaagatcttcta
atcgccgctcaaacttgtaaattctggaggattttgtctgaagataatttaatgtggaga
gagaagtgtttggaggaagggatcagcgaaccttacatgacgaagattatgaggaataat
tggaaatccaaacgcagcgttggttgtggaagtacgtggaaagcttcgttcttacgccat
gcaaggattgaagcgaactggagaagcgggaacactaaaacaccaaagttactaaagggt
cacgacgatcacgtgataacttgtcttcaatttaacggctcacgaatcgtgagtggatct
gatgacaatacacttaaagtttggtcagctatttctggaaagtgccttcgaacacttacc
ggccacacagggggggtgtgggcttcacagatgaggaagaatctcattataagcgggtca
accgatcgaacgttgaaaatatggaatgcagatactggtctttgtgtccacacattatat
ggtcatacatcaactgtaagatgcttagcacttcatgataatatcgttgttagtggttca
cgtgacgcaacattgcgtgcttggaacattgacacgggtgaatgcacgcattgtcttgtg
ggtcacatggcagccgttcgttgcgtttgttacgacggggaacgagttgtatcgggggct
tacgattacatggtgaaagtctgggatccagagacggaggaatgtctgcatactttacaa
ggacacactaatcgtgtctactcacttcagttcgacggccattatgttgtaagtggaagc
ctcgatacttctatcaaagtttgggagattgagcgaggaacttgtttacatacgttgatg
ggacatcagtcgttaacatcagggatggaactacgggataatatattagtgtcgggtaac
gctgattcaaccgtgaaagtttgggatattttaactggggaatgcttgaagactttggaa
ggttcaaataaacatcacagcgcggttacttgccttcaattctacgggaaatttgtgatt
acgagttctgatgatggaactgttaagttatgggatgttaaaactgggaaggttgttcga
gacttagttacgttagattctcgtggttccggtggcgtggtgtggcggatacgagcgtcg
caaactaaacttgtgtgtgcggtgggtagcaggaacgggactgaagaaaccaaactactt
gtgctcgattttgactcagaaccaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (181)   
   KEGG ORTHOLOGY (1)   
   RefGene (174)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (3)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (199)   

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