KEGG   Ciona intestinalis (yellow sea squirt): 100183959
Entry
100183959         CDS       T01056                                 
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20 isoform X2
  KO
K13131  ATP-dependent RNA helicase DDX20 [EC:3.6.4.13]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cin03041]
    100183959
Spliceosome [BR:cin03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   SMN complex factors
    100183959
SSDB
Motif
Pfam: DEAD Helicase_C AAA_30 AAA_19 Baculo_PEP_C Nrap_D5 DAHL
Other DBs
NCBI-GeneID: 100183959
NCBI-ProteinID: XP_018667845
Position
6:473373..476190
AA seq 734 aa
MSNQIAHDLDSKTRTDDIAAQESVTFEDILVSDFVLSGLKKSGFHKPSPIQLKAIPLGRC
GFDLVVQAKSGTGKTCVFSVIALDSIDAKSAALQVIVLAPTREIALQIHEVVSTIGQDIE
QLSVQVFIGGTLVSEDRQKAKRCHIAIGSPGRIKQLISLGVLAVNNVRLFVLDEADKLVE
EGGLQQQINWIYSSLPSTKQMLALSATYPEALAKFLTKYMQQPTFVRLNPTDPSLLGLKQ
YYLLVKECKLPHQLFEEKTRCIIEILSSMTYQQALLFSNYHTRAETLCNALNSSGWRSTF
ISGNMEQWRRTEAITRLKSYQCRILISTDLTSRGIDAQNVDVVINMDVPTDWETYMHRIG
RAGRFGAYGTAVSLVSPGVEASRLHAIAAQCNASIAPLPADFRAILNDQKSNVKLQENLN
ENFKSVNSRVKISCPNLQENLNEQLTSVNNVEISCPNLRLQVKNEHGDSELSADTTRTSD
SFVGSEKYIDTVTMQNDRAKQSYPVIDSLQDVMQQSACLSQNLHYLDMNYKELVADFEYF
KKNGIFLAPPKKLQNEEQKTTNEIELKLDDITKKVDQNLKLSDLSSVNGSMKNEAVLNKN
SGYALRVKCKEIVKSEHTEKLMCSKVKAEQATENKETVNFTAKTDSISETTAAKLEQMPS
KCALTRITMLAKVTQRFLMKMMTVQKLDFNLMRTFLTPTLKKKIKFSQSVNYHLKQTVNI
VCVLRKKYMPKICT
NT seq 2205 nt   +upstreamnt  +downstreamnt
atgtctaaccaaatagctcacgatctagactcaaaaacacgaacggacgacattgccgcg
caagaatcggtcacttttgaagatattttggtttcggacttcgttctttctgggttaaaa
aagtcgggatttcataaaccgtcgccgatacagctcaaagcaataccgctcgggagatgt
ggttttgacctagtcgtccaagcaaaatccggtaccggtaagacgtgtgtgttttccgtt
atagcacttgatagtatagacgcaaaatctgcagcattacaagtcattgtgctcgcccca
acgcgtgaaatcgcgctacaaatacatgaagtagtatccacaattgggcaagacattgaa
caattgtcagtccaggtttttattgggggtacactggtctcagaagaccgacaaaaggca
aaacgatgtcacattgctatagggtcgcctggcagaattaaacaactgatttcgctgggt
gttttagctgtaaataatgtccgtcttttcgttttggatgaagctgataaactagtggaa
gaaggtggcctacaacagcaaattaactggatttattcctctttgccaagcactaagcag
atgcttgcgttatctgccacttatcctgaagcgcttgcgaaatttttaacaaaatacatg
caacagccgacatttgtgcgattaaatccaacagacccttccctacttggtcttaaacaa
tattatctgctagttaaagaatgtaagctaccgcatcagttatttgaggaaaaaacacga
tgtattattgaaattttaagcagtatgacgtaccaacaagcgctattgttttccaattat
catacaagagcagagaccttatgcaacgcactaaatagctctggctggcgatcgactttt
atttcaggcaatatggagcaatggcggcgtactgaagcaataacgaggctaaaatcttac
caatgcaggattctaatatcgactgatctaacttcgaggggaattgacgcccagaatgtg
gatgtagttatcaatatggatgtacctaccgattgggagacatatatgcatagaattggt
cgcgctggaaggtttggggcatatggaacagctgtttcgcttgttagtcctggagtagaa
gcctcgaggctacatgctatagctgcccaatgtaatgcttctatagcacctttgccggct
gattttagagctattttaaatgatcaaaaatcaaatgttaaattacaggaaaatttgaat
gaaaattttaaaagtgtcaatagccgtgttaaaatttcctgcccaaatttacaggaaaat
ttaaatgaacagttaacaagtgttaataatgtcgaaatttcatgcccaaatttacggtta
caagttaaaaatgaacatggagacagtgaattaagtgcagacacaacaagaacaagtgac
agttttgttggttctgagaagtatatcgacactgtgacaatgcaaaatgatcgtgcaaaa
cagtcctatccagtgattgatagcctacaggatgttatgcaacaaagtgcatgtttgagt
cagaacctacattatcttgatatgaactataaagaattagtagcagattttgaatacttt
aaaaaaaacgggatttttttggcgccaccaaaaaaattacaaaatgaagaacaaaaaaca
acaaatgaaatagagttaaaattagatgatattactaaaaaagtagaccagaatttgaaa
ttatctgatctttcaagtgtaaatggtagcatgaaaaatgaagctgttttgaataaaaat
tctggctatgccttgagagttaagtgtaaggaaatagttaaatcagaacatactgaaaaa
ttaatgtgttccaaagtgaaagctgaacaagcaactgaaaataaagaaactgtaaatttt
actgctaaaacggatagtatcagtgaaactacagcagcaaaacttgaacaaatgccatca
aaatgtgcactgacgaggattacgatgctagcgaaagtgactcagcgctttctgatgaaa
atgatgactgtgcaaaaactggacttcaatctgatgcggacctttttaacccccactcta
aagaaaaagatcaaattttcccagagtgtcaattaccatctaaaacaaactgtgaacatt
gtatgtgtcttgaggaaaaaatatatgcccaaaatttgcacatga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (43)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (62)   

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