KEGG   Ciona intestinalis (yellow sea squirt): 100184823
Entry
100184823         CDS       T01056                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100184823
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cin03019]
    100184823
Messenger RNA biogenesis [BR:cin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100184823
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100184823
SSDB
Motif
Pfam: Not3 NOT2_3_5_C
Other DBs
NCBI-GeneID: 100184823
NCBI-ProteinID: XP_002128708
Position
14:complement(1486633..1489586)
AA seq 715 aa
MADKRKLQGEMERCYKKVTEGVETFEDIWMKLSNANNTNQKDKYESDLKKEIKKLQRLRD
QIKTWAASNEVKDKRLLLENRKLIETQMERFKVVERETKTKAYSKEGLGLAAKKDPEQKE
REETMQWLQSTIDAINRQVDMFESEIESFNSISRKKKLTADKTVRQAELVAFLEKHRYHI
RNLETLMRMLDNETISADKINIIRDDIEYYMEACQDPDYEDNEFIYEDMGLDESIVAITA
TAGSPGPGEKISNTSLNNNSSKDEDEIKSADSSPTPQNNTNHSTPSSIKEEEPRKRSKSD
DLISPHKPINNIQRQTSTTPRSMAFQPTNPITTNKPQKGPPPTAHSQPYAAAAGGMQSVT
SNHVSQTQVTASRTILPPESPSPTKKSQAQRSFESSWHGSNHSSLSEANNVEVRNAVNSI
VSSVASLSLTSNPEPATSPPVTVSNLPDLVGSVTPAPTEAPHSQTPTTNGPSLPNGPQTS
HVDLSSLKSMAEQAIANAGLEQRTVTSPPFPPHNTEPLITATNQSRPDLTSLSVVVQQQQ
TAAQQLPMGGGEARIQPLLGVAPLGPVSLSKENMYQQAMLDACWRHMPHPSDSERLRHYL
PRNPCPTPSYYHQTPLPHHDSVEFYLRLSTETLFFIFYYMEATKAQYMAAKALKKQSWRF
HTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRELQ
NT seq 2148 nt   +upstreamnt  +downstreamnt
atggctgacaaacgaaaactgcaaggtgaaatggagcggtgttataaaaaagtaactgaa
ggcgtggagactttcgaagacatttggatgaagctatcaaatgctaacaacacaaatcag
aaggataagtatgaaagtgacctgaaaaaagaaataaaaaaattgcagaggttaagggac
caaatcaaaacgtgggcagcgtcaaatgaagtcaaagataaaaggctacttttagaaaac
cggaaattaattgaaacacagatggagcgttttaaagttgtagaaagagagacgaaaacc
aaggcgtattcgaaagaagggcttggtttagcggcgaaaaaagatccagagcaaaaggag
agagaagaaacgatgcagtggctgcaaagtacgatagatgcaattaatcggcaagtggat
atgtttgagagcgaaattgaatcttttaactcgatctcaagaaaaaagaagttgacggcc
gataaaacggtgcggcaggcggagttagtggccttccttgaaaaacatagataccatata
cggaaccttgaaaccctaatgagaatgctagacaacgagacgatatcagcggacaaaatc
aacataattagagatgatattgagtattacatggaggcatgccaggaccctgattatgaa
gataatgagttcatatatgaggacatgggattggacgaatcaattgtcgctatcactgct
acagcagggtcaccaggtcctggggaaaagatttctaacaccagtttgaataacaacagc
tcaaaagacgaggatgaaataaagtctgcagattcttcccccaccccacagaacaacacc
aatcattcaaccccttctagtataaaagaagaagagcctagaaaaagaagcaaatctgat
gaccttatttcgccccataaaccaatcaataatatacagaggcaaacgtctacaactccc
aggtccatggcttttcagcctaccaatcctattacaaccaataaaccacagaaaggtccg
cccccaacagcacatagtcagccatacgctgcagctgcaggtggaatgcaatctgtaacc
tctaatcatgtttcccagacccaagtcactgcttcaagaaccattcttccaccagagtca
ccgtcaccgacaaaaaaatcccaggcccagaggtcatttgagtcctcctggcatggtagc
aatcatagctcgttatcggaagctaataatgttgaagttagaaacgcagttaatagcatc
gtttcaagcgttgcgtctctttcgcttacttcaaatccggagccggcaacctcaccgcct
gtcactgtttcaaacttacccgacttagtgggttctgtaacccctgccccaaccgaagcc
ccacattcccaaaccccaacgacgaatggacccagcttaccaaacggccctcaaacctct
catgtcgatttatcatcattgaaaagtatggcagagcaagcaatcgcgaatgctggttta
gagcagagaaccgtaacttctcctccctttccaccacacaatacagagccgcttataacc
gcaacaaaccagtctagaccggatttaacatcattaagtgttgtggttcaacagcagcaa
acagctgctcaacaactgcctatgggtggcggagaagcaagaattcaaccccttcttgga
gttgctccattaggcccagtatcactcagtaaagagaatatgtaccagcaagcaatgcta
gatgcgtgttggaggcatatgccgcacccttcagattcagagcgtttgcgccattacctt
ccaagaaacccctgtcccaccccttcctattaccaccagacccctttaccccatcatgac
tccgtggagttttacctacggctgtcgacggagacgctcttttttattttctactacatg
gaggcaactaaggcccaatacatggcggccaaggcactgaagaagcagtcctggcgcttc
catacaaagtacatgatgtggtttcagcgccacgaagaacccaagaccatcacagatgaa
tatgagcaaggtacctacatttactttgactatgagaagtggggccagcggaaaaaggaa
ggcttcacctttgagtacaggtatttggaggaccgggagctgcagtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (52)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (64)   

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