KEGG   Ciona intestinalis (yellow sea squirt): 100187076
Entry
100187076         CDS       T01056                                 
Name
(RefSeq) ATP-dependent DNA helicase Q1-like isoform X1
  KO
K10899  ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cin03400]
    100187076
Enzymes [BR:cin01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     100187076
DNA repair and recombination proteins [BR:cin03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     100187076
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII RQC GAS Fer4_10 Fer4_17 DUF724 SlyX APG6_N
Other DBs
NCBI-GeneID: 100187076
NCBI-ProteinID: XP_026690193
Position
1:5069246..5076498
AA seq 697 aa
MWKFVAALSKGRVGSFTKVLQPQNKERLHFEPRSLSNLQLGVRSTNDYQTTSSNQGDWGK
SFLEGLKLKKNVQQVEDGVVDLQMELRKVKYAIENKNQQVLSIQSEQEMLHKKMTDIVQE
IKDNSSPHSNTKHVPQLHNTDVDWSSKNFPWSAELDKTLQDVFQIKHFHPVQLQAINSTM
SKCDVLLIMSTGGGKSLCFQLPAIISKGITLVVTPLVSLMEDQVLNLKQYGIKAHMLKAD
SSMDDVMEVYDSMKSPNPQVKLVYVTPEKISKSKQFMSHLDKCYKSGNLSRIAIDEVHCV
SQWGNDFRPDYKMLGILKRLYPSTPIIGLTATSTNKVTFDTKQLLNIPDCLVFRTPLVRK
NLFYEVRPKPTTHQKVVQDIVTTIQENFKGESGIIYCISCRNCTDVCNSLIKSGIRAAVY
HARCSAKKKSEVHQQWLNNEIQVICATVAFGMGINKPQVRFVIHHSISKSVENYFQEAGR
AGRDGKPSLCLLYFGFWDVFRQTSMVFRERTGTENLSKVVKFCHNLKTCRVELLANHFGE
VNEQCQSPGMCDVCSNLQKTTKKDVTEPCKVLLRLIKSNSMDGNRLTGIQLVDAAIRDSK
NRKTKWKDLSRHEWQRIVFDMLVNGFLREDYHLTSRSTIVYLTYGRNVRFLLNNKVMLDL
HDNIQQPKNIYKDCLSLNHGTLEKIPKLDNLGKSDNT
NT seq 2094 nt   +upstreamnt  +downstreamnt
atgtggaagtttgttgctgctttatcgaaagggagggtcgggtcatttacgaaagtgtta
caaccacaaaataaagaaagacttcacttcgaacccaggagtttgtccaacttgcaactc
ggtgttcggtcgaccaatgattatcaaacaacttccagcaatcaaggtgattgggggaaa
agttttctggaagggttgaagttgaaaaaaaatgttcaacaagtagaagatggtgttgtt
gatctccagatggagctacgaaaagtaaaatacgcaattgaaaacaaaaatcaacaagtt
ctctccatacaatctgaacaagaaatgcttcataaaaagatgacagatattgtacaggag
atcaaagataactcatcacctcattcaaatacaaaacatgttccacagctgcacaatacc
gatgtggattggtcttcaaaaaattttccatggagtgcagagctcgataaaactctacag
gatgtgtttcaaattaaacatttccaccctgtgcagttgcaagcaatcaactccactatg
agtaaatgtgatgtgttgctcataatgtcaactggtggtgggaaaagtttatgctttcaa
ttaccagcaattatttccaaaggaataacactggtagttacaccattggtatctttaatg
gaggatcaagttttaaacttgaagcaatatggaataaaagctcacatgctaaaggctgat
tcctccatggacgatgtaatggaagtttacgattcaatgaaatctccaaatcctcaagtg
aaacttgtttacgtgacaccagagaaaatatcaaaaagcaaacaattcatgtcccatttg
gataaatgttacaagtctggtaacttgtcacgtatcgcgatagatgaagtacattgtgtg
agtcagtggggaaacgactttagaccagattacaaaatgttaggaattttaaagcgactt
tatccttccacacctattattggtctcacagcaacttccaccaacaaggttacatttgat
acaaagcaacttcttaatattcctgattgcctggtgtttcgaaccccacttgttcgaaag
aatttattttacgaagttcgacccaagccaactactcatcagaaagttgtccaagatatt
gtcacaactattcaagaaaactttaagggggaatctggcatcatctactgtatatcatgt
cggaattgcacagatgtttgcaacagtttgatcaaaagtggaatcagagctgcagtatat
cacgctcgatgttcggcaaaaaagaagtccgaagttcaccaacaatggctcaacaatgaa
attcaggtgatttgtgcaactgtagctttcggaatgggaatcaacaaaccacaagttcgc
ttcgtaattcaccattcaatcagtaaaagtgtggaaaactacttccaggaagctggcagg
gcaggaagggatggaaaaccatctttgtgtcttctttacttcggcttctgggatgttttt
cgacaaacatcgatggttttcagagaacgaacaggaacggagaatttatcaaaagtcgtc
aagttttgtcataatttaaaaacctgtagagttgaattactcgcaaatcatttcggggag
gtaaacgaacaatgtcaatcacctggtatgtgtgatgtctgttcaaacttacaaaaaacc
acgaagaaagatgtaacagaaccatgcaaagtgttgctgaggttgattaaatctaattca
atggatggtaatcggctgacaggcattcaacttgttgatgccgccatacgtgatagcaag
aatagaaaaacaaaatggaaagatctcagcaggcatgagtggcagagaattgtatttgac
atgctggttaatgggtttctcagagaggattaccatctcacatcaagatcaaccatagtt
taccttacatatggaaggaacgttcgctttttattgaataataaagtcatgttggatctc
catgacaatattcaacaacccaagaatatttataaggattgtctctcgttaaaccatgga
acgttagaaaaaatacctaaattggataatctaggaaaatctgataacacctaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (11)   
   Pfam (11)   
All databases (52)   

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