KEGG   Ciona intestinalis (sea squirt): 100187369Help
Entry
100187369         CDS       T01056                                 

Definition
(RefSeq) general transcription factor IIH subunit 4
  KO
K03144  
transcription initiation factor TFIIH subunit 4
Organism
cin  Ciona intestinalis (sea squirt)
Pathway
Basal transcription factors
Nucleotide excision repair
Module
Holo-TFIIH complex
Brite
KEGG Orthology (KO) [BR:cin00001]
 Genetic Information Processing
  Transcription
   03022 Basal transcription factors
    100187369
  Replication and repair
   03420 Nucleotide excision repair
    100187369
Transcription machinery [BR:cin03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100187369
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
Ensembl: 
Position
13
AA seq 463 aa AA seqDB search
MERLQTVKLKRLGLHEYLCSLPPAILDSLYEHPATCMAVFRELPELAKYYIMRILFVEQP
ISKAAVSAWVKVNAKQDHNEAVKSMCSLRVWMESNLQGSASTAFIMSSIFRRNLQKALVG
GGEPWSSTAHLGPDKHGKDIESLDKYASERWEMLLHYLVGSETNSTISQDIKDLINQAGL
MKQGSEGGRSYSIITAKGFQFLLLDNASQVWYFVLEYLDWVRERGMNLVPILRFIFELSF
SSPGKDLPTDGRDDHVLICLQHFREMGLVMQRKRKSRRFYPTYLAINLANRANASVTNVT
NSRGFILAETNFRVYAYTDSELQYSILSLFCKMLYRFPNVCVLQLTRKSIQSAVVNGITA
DQILHYIKANAHPDMLKNDPIIAPTLADQVRLWAMERDRLTYRDGVLYNQFLAQKDFEVL
RNYAKELGALIWENSSKRYMVVTKDGHDQVKRYWKKYKKESDT
NT seq 1392 nt NT seq  +upstreamnt  +downstreamnt
atggagagattgcaaacggtgaagttaaaacggttaggtttgcatgaatacctatgcagt
ttaccacctgcaatactggactcattatatgaacaccctgcaacttgtatggctgtattt
agggagctcccagagctagccaagtattatattatgcgaatattgttcgtggaacaacct
atatctaaagctgctgtgtctgcttgggtgaaagttaatgctaagcaagaccacaatgaa
gctgtgaaatccatgtgcagcttacgggtttggatggagagtaatctacaaggttcagct
tcaactgccttcattatgagctcaatatttagaagaaatctacaaaaagcacttgttggc
ggtggggagccatggtcaagcaccgcacaccttggtcctgataaacatggtaaagacatt
gaaagcttggataaatacgcaagtgaaagatgggagatgttattgcattacttagttgga
tcagaaacgaactcaaccataagccaagacatcaaagacctgattaaccaagctggcttg
atgaagcaaggcagtgaaggggggagatcatattccatcattactgctaagggattccaa
tttctattgttggataacgcatcacaagtttggtattttgtccttgaatatttggactgg
gttcgagagcgaggaatgaacttggttccaatccttcgatttatctttgaacttagtttc
tcttcacctggaaaggacctaccaactgacgggagagatgaccatgttctcatatgcctc
caacatttcagggagatgggacttgtaatgcaaagaaagagaaagtcgcgccgtttctac
cccacttaccttgctattaacttggcaaaccgggcaaatgcgtcggttacgaacgtgacg
aacagtcggggctttattttggctgaaactaactttagagtctatgcttatacagattca
gaactgcagtattccatcttgtctctattttgtaaaatgttgtatcgtttcccgaacgta
tgtgttctacaactgacgcgtaaaagtatccaatcagctgttgtgaacggaataactgcc
gaccagatcctacattatattaaagctaatgcgcatcctgatatgctcaaaaatgaccct
attatagctcccacccttgcggaccaggttcgactatgggccatggaaagagataggttg
acatatagagatggtgtcctgtataaccagtttcttgcacagaaagattttgaagtttta
agaaactatgcaaaggaacttggcgccttaatttgggaaaactcatccaaaagatacatg
gtggttacaaaggatgggcatgaccaagtaaagagatattggaaaaaatataaaaaagaa
tcagacacttga

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