KEGG T01056: 619278

Ciona intestinalis (sea squirt): 619278

Entry

619278 CDS T01056

Definition

thrombospondin A

Orthology

K16857

thrombospondin 1

Organism

cin Ciona intestinalis (sea squirt)

Pathway

cin04145	Phagosome
cin04350	TGF-beta signaling pathway
cin04512	ECM-receptor interaction

Class

Environmental Information Processing; Signal transduction; TGF-beta signaling pathway [PATH:cin04350]
Environmental Information Processing; Signaling molecules and interaction; ECM-receptor interaction [PATH:cin04512]
Cellular Processes; Transport and catabolism; Phagosome [PATH:cin04145]

SSDB

Motif

Pfam:

TSP_C TSP_3 TSP_1 VWC cEGF

Other DBs

NCBI-GI:

NCBI-GeneID:

Ensembl:

UniProt:

Position

AA seq 1168 aa
MRIAWILAFLGLVAAARAVGLSAVNAFDLFSMTGISHKRSQPAYRRAITTDGSSPDHFFP
AYKFKRPLGPHALVATDDQFRLLSASLARIDTFYFSANMKQRMNNVGTLISISPTVSMAQ
AVNTMAIVSDAPQDRLDLFYTVGERNHVLTFTNVGIANSLKEWKNMTMEFSGYDVTLYVN
CRNVGTRRLESEFYRRLDAGSSRISLATAYENKDDFKGSLQNVRFRFGSRVEANPMLCDS
QSTPSNIESNRSEFDPEFDVAPSRNAGPSHHDNVLPGSNTMARQFVLQVVQDSCELTCRP
PQGAKRPDDLEVFFSCMDATGMHKNGERWNVDDCVSCVCDGGHRLCSNQTCPLLHCLNVT
RVPGECCPKCQAETDGFSAWSSWSECSVTCGIGSQTRGRSCDRANFPCNGPTLENRNCLR
DPCKRRRDGGWSFWTRWAPCSVTCGRGRSTRIRECNAPIPELDGEECLGPDRQTKDCREA
PCAVNGGWGTWSPWKRCSVSCGTGFRTRKRKCNNPKPRYGGKACPGDKKEVGQCNTQNCP
VDGCLASPCFGGVKCTSYDDGSFTCGSCPAGTQGDGINCQDIDECTLVADACFHYQGVHR
CQNHFPGYSCLPCPSGYRGDVQSGVGVIHARAHKQECVMSNPCTDGANPCPENAECIFLG
KTVSPPFICKCRPGYASCSHCDGLICADDTDLDGWADNEIVCPGSNTSVTCHEDNCPRLP
NSGQEDSDEDGEGDACDRDDDNDGIYDEQDNCQFIYNPYQSDVDRDGVGDMCDNCVHDRN
ADQKDTDGNGEGDACSLDIDGDSIENIFDNCVYVYNFDQLDSDMDGVGDACDNCPLVHNP
SQEDRDSDKVGDSCDSNLDVDEDGIQNNLDNCPYIANANQADHDNDGLGDACDPDDDDDG
IPDDRDNCRLVVNPSQLDTDGNGRGDACEGDFDGDNIMDADDACPLNNKISVTDFRSFDM
IALDPEGIAQIDPNWVVRNKGKELIQTKNCDPGLAIGMDRFEAVDFSGTFFVNTEKDDDY
AGFVFGYQSSSKFYVVMWKQVSQTYWKNYPSRAHGYSAIQVKVVNSTSGTGEALRNALWH
TGDTKNEVRTLWYDDMQQGWRDYTAYRWTLQHRPETGFIRVTMYEGKDLLVDSGALYDKT
FAGGRIGFFIFSQEMVFFSDMEYMCKDT

NT seq 3507 nt +upstreamnt +downstreamnt
atgcgaattgcttggattctcgcttttctaggactcgtcgcagccgctcgagcggtcggc
ctgtcggcggtaaatgctttcgacctcttttcaatgaccggcatctcgcataagagatcc
caacctgcatacagacgagctataactacggacggaagcagtccagatcatttctttccc
gcatacaaattcaagaggcctctcggaccacatgctctggtggcaaccgacgaccaattc
cggcttctttcagcgtcgctggctcgcattgacactttctacttcagcgctaatatgaag
cagagaatgaacaacgtcggcacccttattagcatctccccaacagtgagcatggcacaa
gcggtcaatactatggcgatcgttagtgatgccccacaagacagacttgatctcttttac
accgttggtgaacggaatcatgttttgaccttcacaaatgtgggtatcgccaattcactg
aaagaatggaaaaacatgaccatggagttcagcggttacgatgtgacgctgtacgttaac
tgccgcaacgttggcacacggcgattggagagcgagttctacaggcgtctggatgctggc
agcagccgaatcagtctcgcaactgcctatgaaaacaaggacgattttaagggatctctt
cagaacgttcgatttcgatttggttcgagagttgaagccaaccctatgctctgcgactcg
caatctacgccaagcaacattgaaagcaaccgttcagagtttgacccagagttcgatgta
gcgccatcccgcaacgcgggtccttctcaccacgacaacgttctgcctggcagtaatacc
atggcgcgccagtttgtgctgcaggtcgtccaagattcttgcgagctgacatgccgcccg
ccgcaaggagcgaaacggccggacgaccttgaggtgttcttctcttgcatggatgccaca
ggcatgcacaagaacggagagagatggaacgttgacgactgcgtgtcttgcgtatgcgat
ggtggccaccggctatgttcaaaccaaacctgccctcttctacactgcctcaatgtgacg
agagttcccggagaatgctgcccgaaatgtcaagctgaaactgatgggttttctgcatgg
tcaagctggtcggaatgtagcgttacttgcggaattggaagccagacaagaggccgatct
tgcgacagagctaactttccatgcaatggaccaacgttggaaaaccgaaactgccttaga
gacccatgtaaacggcgccgtgatggaggttggtcgttctggaccagatgggctccatgc
agtgtaacttgcggtagaggcagatccaccagaatccgtgaatgtaatgcaccaattcca
gagttggacggtgaagaatgtcttggacctgacagacaaaccaaagactgcagagaagcg
ccttgtgcagttaatggcggatggggtacctggtcaccatggaaacgttgtagtgtttca
tgcggaacagggttccgcacgcgaaagcgaaagtgtaacaacccgaaaccgaggtacggc
ggaaaggcgtgcccgggagacaagaaggaagtcggccaatgcaacacacagaattgccca
gttgacggttgtttggcgagcccttgcttcggtggtgtgaaatgcacttcgtatgatgat
ggtagtttcacttgtggttcatgccccgctggaactcaaggtgatggcataaactgccag
gacattgacgagtgcactctggttgccgacgcctgcttccactatcaaggcgtgcataga
tgccagaaccacttcccaggctattcgtgtcttccctgcccgtccggatatagaggcgac
gttcagtctggagtcggcgtcattcacgcccgtgcccacaaacaagaatgcgtcatgtcc
aatccatgcacagacggggcgaacccctgcccagaaaacgcggaatgcatattcctcggc
aagaccgtcagcccaccattcatttgcaagtgtcgaccaggctacgcgtcatgctcacat
tgcgatggtttgatttgtgcagatgataccgacttagatggctgggcagacaacgaaatc
gtatgcccaggcagcaacacttcagttacatgccacgaggataactgccctcgactgccg
aatagcggacaagaagattcggacgaagatggcgaaggcgatgcttgcgacagagatgac
gacaatgatggcatatatgacgaacaggataactgtcagttcatatacaacccgtaccaa
tctgatgtcgaccgagacggtgttggagacatgtgcgataactgcgtgcatgataggaat
gcagaccaaaaggataccgatggtaacggcgaaggggacgcttgctctcttgatattgac
ggcgactccatcgagaacatattcgacaactgtgtttacgtttacaattttgatcaactc
gatagcgacatggatggagttggtgatgcatgtgacaactgtcctctggtacacaacccg
tcacaggaggaccgagattccgacaaagttggcgacagttgcgactcaaacttagacgtc
gatgaagatggaatacaaaacaatttagacaactgcccatacattgcaaatgccaaccaa
gcagatcacgataacgacggtttgggcgacgcgtgtgatccagatgacgacgacgatggt
atcccagatgaccgagataactgcagattggttgtcaacccaagccaactcgatactgac
ggtaacggcagaggcgacgcttgtgagggcgactttgatggtgataatatcatggatgcc
gacgatgcttgtcctttgaataacaagataagtgtaactgacttcaggagcttcgatatg
attgctcttgacccagaaggtattgcacaaattgatcctaactgggttgtgaggaacaag
ggtaaagagctcattcagaccaaaaactgcgaccctggactcgccatcggaatggaccgg
tttgaggcggttgattttagcggaactttctttgtcaacactgaaaaagatgacgattac
gcgggttttgttttcggatatcaatcttccagtaaattctacgtagtcatgtggaagcaa
gtatctcaaacctactggaaaaactacccatcacgtgcccacggatacagtgccatacaa
gtcaaggttgttaactcaacttcaggaacaggcgaagctcttagaaacgcactttggcac
accggggacacgaaaaacgaggtacgaactctttggtacgatgatatgcagcagggctgg
agggattataccgcttacagatggaccttacaacacagaccagaaactggtttcatcaga
gtgacaatgtacgagggaaaagatcttttggttgactccggtgcgttatacgataaaaca
tttgccgggggaagaattggattctttattttctcgcaagagatggtgtttttctcggac
atggaatacatgtgtaaagacacgtaa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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