KEGG T01056: 778882

Ciona intestinalis (sea squirt): 778882

Entry

778882 CDS T01056

Gene name

zf(mynd)-3

Definition

zinc finger protein

Orthology

K11847

ubiquitin carboxyl-terminal hydrolase 19 [EC:3.1.2.15]

Organism

cin Ciona intestinalis (sea squirt)

Class

SSDB

Motif

Pfam:

UCH UCH_1 zf-MYND CS

Other DBs

NCBI-GI:

118344206

NCBI-GeneID:

778882

UniProt:

Q1RPW0

Position

AA seq 1145 aa
MPEANKNCANVVASLLLKRGNTTMARKRKTDGLPINSLVRMSWSQRFHDVYMILWKINDD
LNLDEVDILLTDCTCSIKLPNGESHFWHFFLDVESAMSQRIPSSNAIIIVMPKKDHTVFW
PTFKKVEGLSDIGKSNFQNAPPKKMFLEESEKNTSFQDEFTTSGATPCNFPIKMETSPSV
TMATGIKVPHGVLIGGNSPLTHHTAGSRTETKSLDKIDGQSSKLNPEINKELTTELDGLV
HHWRSKSKGCIVLDLQLNKSDVCDVKVEFYEMAVVVKFRNSSSDFCRKHIVLENSLLQWK
TQLSFSIIPDKCSFSIMDTFVQLTMQKKTTDHLETLLHESGHLVSPNTVGDTKKISQPGL
GYTGLINLGNTCFMNSVIQALANTPELRNYFLDEKFHCHINTKNPLGVGGKMAKAFYVVM
RKLWGCSNKAFSPHEFRDVVGLKGSRFTDGMQHDAHEFMAFLLDMLHEDLNTARNSTSIQ
PTSEVKGISEEMMAFEAWKSYLSRSGSFIIENFHGLLKSQLKCLVCKTKSVKFDPFLFLS
VPLPKKVQPFSVFFFRKDVSEPIKITVSVHSDGAKMSDVLSQVGIHTGTNINHLVSYEVN
NNALCRFFVPTSPLIRNSHTSTVHIQEMLSPEKEGEPVLQIICTQRKMVPDINKHCAYCK
REPDNSFELKRCMNCLKVAYCDRDCQKGGWLKHRNVCRRTPELVGHPFVMCIAKSKATYT
NVKSLAVKWAKLSSDVEILSSSMDGENANGEHSVSEMPMELRFSSWKENKNEVYPVIEDK
GEELLDFSSRKFLSILWQNDKSKKNYVKVSDKAQDFSAPGRTMDLAKKSSPKYDLLECLS
LFTEPEILTQDEAWYCPQCKKHRQAMKKMSLWDLPDVLIIQLKRFSFKNYLWRDKINMFI
DLPVSNFDMTSYCNNPKTSKSLCYDLFAVINHHGGILGGHYTTNVRLPDVNNTSESVVDW
RLCDDRHVTKLNNKVVTEAAYVMFYHRRSSKNSNTMSESLNIPHEPQADEAQCDEATNAT
SEHQPVINTNGEKSETTETSVKHMTNSNETSLPLEESKQKIVNTTTVNDSPLSPVGRSAQ
KLSKMQIEKSVDSKPSEEHNIDQITTQNSNSQQTAQLRNCINSGDSGLKPQGKEVLSYTD
MDAID

NT seq 3438 nt +upstreamnt +downstreamnt
atgccggaagctaataaaaattgcgcaaatgtagtcgcttcactgttgttgaaaagaggt
aatactacaatggcgaggaaacgaaagacggatggattacccataaactcgttggttcgc
atgagttggtcccagagatttcatgatgtttatatgattttatggaagattaacgatgac
cttaatttggatgaagtggatatcttgcttacagattgcacttgctctattaagctacca
aatggtgaaagtcatttttggcatttcttccttgatgtagagtctgcaatgtcacagcgt
attccatcatctaatgccattatcattgtgatgcctaagaaagaccatacagtgttctgg
cccacttttaagaaagtggaagggttaagtgatattggaaagtcaaactttcaaaatgcc
cctcccaaaaaaatgtttctagaggaatcggaaaaaaatactagttttcaggatgagttc
accacttcgggggcaaccccatgtaactttccgatcaaaatggagacttctccatctgtt
accatggcaacaggcattaaagtccctcacggcgttctgattggtggtaatagcccactt
acccaccatactgctggttcgagaacagaaacaaaatcccttgataaaattgacggacaa
agctcgaagttaaatcctgaaataaataaagagttgacaactgagttagatggtcttgtc
catcattggcgctccaagagcaaaggttgcattgtgttagacctccagttaaataaaagt
gatgtctgtgacgtcaaagtggagttttatgaaatggccgtcgttgtcaaattcagaaac
tcgagctctgacttctgcagaaaacacatagtacttgagaactcattactgcagtggaaa
actcagctaagtttttccatcattcccgataaatgcagcttcagcataatggacacattt
gtacaactaaccatgcagaagaaaacaactgaccatcttgaaacacttctgcacgaaagt
ggtcacttggtctctccaaatacagtgggagatacaaagaaaatatcacagcctggtctt
ggatatacaggtttaataaacttgggaaacacctgctttatgaacagtgttattcaagct
cttgcaaatacaccagaactgcgcaattattttcttgatgaaaaatttcattgtcatatc
aacacaaaaaatccactcggagttggtggtaaaatggcgaaagcattttacgtggttatg
cgcaaactttggggttgttctaataaagccttttctccccatgagttcagggatgtcgtt
ggattaaaaggatctcgtttcacagatggaatgcaacatgacgcacatgagtttatggct
ttcttgctcgacatgctgcatgaggatctcaacacagcaagaaactcaacctcaatccaa
ccaacaagtgaagtgaaaggaatttcagaagaaatgatggcgtttgaagcgtggaagtcg
tacctatctcgctctggttcatttatcatagaaaacttccatggtttgctgaagtctcag
ctcaaatgtcttgtttgcaaaacaaaatctgtcaagtttgacccgttcttgtttctctcc
gttccacttcctaagaaagttcagccgttttcggttttctttttccgaaaagacgtcagc
gagccaataaagattactgtctctgtgcattcagatggtgcaaagatgtccgacgttctt
tcccaagttgggattcacactggcaccaacatcaaccatctggtttcatatgaagtaaac
aataatgcattgtgtcgcttttttgttccaacttcaccactgatccgtaactcccacacc
tcgacagtgcacatccaagagatgctctcaccggaaaaagagggcgaaccagtgcttcag
attatttgtactcagcgcaaaatggttcctgatattaataaacattgtgcttattgcaag
cgtgaacctgacaacagtttcgagctcaaaagatgcatgaactgcttgaaagttgcttac
tgtgacagggattgtcaaaaaggtggttggcttaaacatagaaacgtatgtcgacgtaca
cctgagttggttggtcatccatttgtgatgtgtattgcaaaatctaaagcaacttacacc
aatgtaaagtcactggctgtgaaatgggcaaagttaagctctgatgttgagatccttagt
tcttccatggatggtgagaatgctaatggtgaacattctgtttcagaaatgcctatggaa
ttacgtttctcatcttggaaggaaaataaaaatgaagtttacccagttattgaggacaaa
ggtgaagaactattggattttagttccagaaaatttttatcaattttgtggcagaatgac
aaatcgaagaaaaattatgtcaaagtttcagacaaagcacaagatttcagtgccccgggt
aggacaatggatcttgctaaaaaatcctcaccaaaatacgatttactggaatgccttagt
ttgtttactgagcccgagatattaacccaagatgaagcttggtattgcccacaatgcaaa
aagcaccgacaagcaatgaagaaaatgtcactttgggatttgccagatgtgctaataatt
caactcaagcgattttcttttaagaattatctctggagagacaaaatcaacatgtttatt
gatcttcctgtcagcaactttgacatgacatcttactgcaacaacccgaaaacctccaag
tcactttgttatgacttgtttgcggtaattaaccaccatggagggatactagggggccat
tacacaaccaacgtgcgtcttcctgatgtaaataacacctcagagagcgtagttgactgg
cgtttatgtgacgacagacacgtcacaaaactcaacaacaaggttgttactgaagctgca
tacgtcatgttctaccacagacgctctagtaaaaactccaatactatgtcggaatcattg
aatataccacatgaaccacaagcagatgaagcacagtgtgatgaagccacaaatgcaact
tcagagcatcaacccgttatcaacacaaatggagagaaatctgaaacaaccgaaacctct
gtaaagcatatgaccaattccaatgaaacatcccttcccttagaagaaagcaagcagaaa
atagtaaataccacaactgtgaatgattccccattatccccagttggcagatcagcacag
aagctttctaaaatgcaaattgagaagtctgtagactctaaaccctctgaagaacacaat
attgatcaaataaccacacagaattccaattctcaacagacagcacagcttagaaattgc
ataaattcaggagattcaggattaaaacctcaaggaaaggaagttctttcttacacagat
atggatgcgatcgactga

All links

Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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