KEGG   Chryseobacterium indologenes: CEQ15_00400
Entry
CEQ15_00400       CDS       T04932                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cio  Chryseobacterium indologenes
Pathway
cio03030  DNA replication
cio03410  Base excision repair
cio03420  Nucleotide excision repair
cio03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cio00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CEQ15_00400
   03410 Base excision repair
    CEQ15_00400
   03420 Nucleotide excision repair
    CEQ15_00400
   03430 Mismatch repair
    CEQ15_00400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cio03032]
    CEQ15_00400
   03400 DNA repair and recombination proteins [BR:cio03400]
    CEQ15_00400
Enzymes [BR:cio01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CEQ15_00400
DNA replication proteins [BR:cio03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CEQ15_00400
DNA repair and recombination proteins [BR:cio03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CEQ15_00400
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CEQ15_00400
   MMR (mismatch excision repair)
    DNA ligase
     CEQ15_00400
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CEQ15_00400
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 zf-ribbon_3 UPF0758_N
Other DBs
NCBI-ProteinID: ASE60091
UniProt: A0A5R9PIT8
Position
complement(90045..92051)
AA seq 668 aa
MSENIQQRIEQLRKELHQHNENYYLLDTPTISDYDFDMLLEELRDLEAKHPEFYDDNSPT
VRVGGGITKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTINDPVEFVAELKYDGASI
SILYENGKLTQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPSQFFMRGEIYLTRKNFD
KLNKQREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSSVLYQFISEEVPAETHWELLQ
KAQSWGFKTSQQAKLCRTLDEVKEFITFWDTERHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETELQTVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHEHDFVYVEKGGEIIPKIVGVNTDKRTEESREIEYIKNCPECGTELVKVEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIENLGSETIEQLYRERLIENPADFYVLTKEQLLP
LERMAEKSAQNIITGIEKSKEIAFEKVLYGIGIKHVGETVAKKLVKNFPTIDELKNATVE
ELCQVEDIGAKIAVSIVDFFQNSENVLMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLF
TGKLSLFTRESAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIENK
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgtctgaaaacattcaacaaagaatagagcagctccgtaaagagcttcaccaacataac
gaaaattattatctgctggatactcctaccatatctgattacgactttgatatgctattg
gaagaacttcgcgacctggaagcaaaacatccggaattttatgatgacaattctcctacg
gtacgtgtaggtggtgggatcactaaagttttccctacaatccagcataaattcaggatg
tattctctggataactcctacgattttgatgatctggaagattgggagaaaagaattatt
aaaaccattaatgatccagtagagtttgtagccgagctgaaatatgacggtgcatccatt
tccattctttatgaaaacggaaaactgacccaggctgtaacgcgtggtgacggattccag
ggagatgagattacgccaaacgtccgtacaatttctgatattccactgacattaaaagga
gattttccttctcagttttttatgcgtggtgaaatttatctgacaagaaaaaactttgac
aagctgaataagcaacgtgaggaagaaggtcttgacccgttcatgaatccaagaaataca
gcgagtggaagtttaaaaatgcaggacagcggcgaggtaagaaaacgtggattatcttct
gtactgtatcagtttatttcggaggaagttcctgcagagactcattgggagttgcttcag
aaagcccagagctggggtttcaaaacgtctcaacaggcaaaattatgcagaacactcgat
gaggtgaaagaatttatcacattctgggatacggagcgtcataatcttccctttgagatt
gatggtatagttttaaaagtaaattcattacaacaacagagacaacttggatataccgcg
aagtcaccacgttgggcaatggcttacaagtttaaagcagaaaaggtagagaccgaatta
cagactgtttcttatcaggtgggaagaacgggggctattactcctgtcgccaatttaaaa
cctgttttattggccggaaccattgtaaaaagagcttctcttcacaatgaagatattatc
aaaaagctggacctgcacgagcatgattttgtatatgtagaaaaaggaggtgagattatt
cctaaaattgttggggtaaatactgataaaagaacggaggaaagcagagaaatagaatat
atcaaaaactgtcctgaatgtggaaccgagctggtaaaagttgaagaccaggcgatccat
ttctgtcctaatgagcttcactgcccgccacaagtggtaggaagaatgattcactacgtt
tccagaaaagcactgaacatcgaaaatcttgggagcgaaacgattgagcaattatacaga
gaacggttgattgaaaatcctgcagatttctacgtactgacgaaagagcaacttcttccg
ctggaaagaatggcagaaaaatctgcccagaatatcattacaggaatcgaaaaatcaaaa
gaaattgcatttgaaaaagtactgtacggtatcggaatcaaacatgtaggggaaacggtt
gccaaaaaactggtaaaaaactttcctacgattgatgagttaaaaaatgctactgttgaa
gagctttgtcaggtggaagatatcggagctaaaattgcagtcagcattgtcgattttttc
cagaactccgaaaatgttttaatgattgaacgtttaaaatcttacggtgtacaactggaa
aaaggagaaagcaccaatgaggtcttatccaatgttctggaaggtaaaactttccttttc
accggaaagctatctctgttcacgagagaatctgcagaagagatggtggaaaagcatggc
ggaaaaaacatttctgccgtttctaaaaacctcaattatcttgtggtaggtgaaaaagcg
ggaagtaagcttaaaaaagcccaggatatcggcactattgaaatccttgatgagcaacaa
ttcctagatttgattgaaaataagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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