KEGG   Citrus sinensis (Valencia orange): 102609129
Entry
102609129         CDS       T02983                                 
Name
(RefSeq) DNA-repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    102609129
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cit03400]
    102609129
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     102609129
SSDB
Motif
Pfam: BRCT BRCT_2 PTCB-BRCT RTT107_BRCT_5 HisK-N-like
Other DBs
NCBI-GeneID: 102609129
NCBI-ProteinID: XP_024957523
Position
7:join(10233756..10233801,10233930..10234201,10234285..10234473,10234666..10234777,10235101..10235177,10235374..10235484,10236008..10236094,10236909..10237223)
AA seq 402 aa
MFSVYYRWNTHADLYGTSVLNSEFDMSDSNTSSGNGNNKTQKRNLPSWMTSSENESNSHG
KKPTDTDENEEYQKDEKTKQAKGRDKAHNGSSLASSLRANNFSKLLEGVVFVLSGFVNPE
RSTLRSRAIEMGANYQADWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKEWILECYNQKK
LVDIDSYLMHAGKPWRKGYISHKTSQEGSPPRKCPKVEKQSPSRPASFTSSKSKASNPSK
EKFSPSELKKWAADDLKKTISWLESQEEKPEQSEIKQIAAEGILTCLQDAIDSLEQNQDI
QQITEQWQCVPRVVEELAKLEGTKKVPASPSKKDLCKRAKACKKIYEEELGKLDNETREK
TTQRAKDGRNKATSSDAAGYDSEETIEMTEEEIDLAYKSITS
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgttttcagtttattataggtggaatacccatgctgatctttatggaacaagtgtactg
aactctgagtttgatatgtctgattcaaatacaagttcaggtaatggtaataataagacc
caaaagcgaaatcttccttcatggatgacttcaagtgagaatgagagtaactctcatgga
aagaaaccaactgatactgatgaaaatgaagagtaccaaaaagatgagaaaaccaagcaa
gctaaagggcgtgataaagcacataatggcagtagccttgcttccagtttgcgtgccaac
aacttttccaaacttctggaaggagtcgtctttgtattatctgggtttgttaatccggag
agaagtacattgaggtctcgggctattgaaatgggagcaaattatcaagctgattggaac
tcaaattgcacactcttggtttgcgcttttccaaataccccaaagtttcggcaggttgag
gcagattgtggtacaattgtttcaaaggaatggatattagaatgttataaccagaagaag
cttgttgatattgatagttacctcatgcatgcggggaagccatggcggaaaggctatatt
tcccataaaactagccaagaaggatccccacctagaaaatgtccgaaggttgaaaaacaa
tcgccatccaggccagcttccttcacatcctccaagagtaaggcttctaatccatctaaa
gagaaattttctccctctgaacttaagaaatgggctgccgatgatttgaaaaagaccata
tcatggctagagagtcaagaggaaaagccggagcaaagtgaaataaaacaaatagctgct
gaaggaatcctaacttgtttgcaagatgccatagattctcttgaacagaatcaggatatt
cagcaaataacagagcagtggcaatgtgtccctcgtgtggtcgaggagcttgctaagctt
gagggcactaaaaaggttccagcttcaccttcaaaaaaagatctctgcaaacgggctaag
gcctgcaagaaaatatacgaagaggaattaggcaagttggacaatgagactcgagaaaag
actactcaaagggccaaggatggaagaaacaaagcgacctcaagtgatgcagctggttat
gacagtgaagaaacaattgaaatgacagaggaagaaatagatcttgcctacaaaagtatt
acttcttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (5)   
   Pfam (5)   
All databases (35)   

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