KEGG   Citrus sinensis (Valencia orange): 102620919
Entry
102620919         CDS       T02983                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4 isoform X2
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
cit03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102620919
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102620919
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102620919
   03041 Spliceosome [BR:cit03041]
    102620919
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102620919
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102620919
Spliceosome [BR:cit03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102620919
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 102620919
NCBI-ProteinID: XP_006479933
Position
3:join(45198157..45198159,45198306..45198404,45198537..45198614,45199102..45199141,45199430..45199597,45199788..45199810)
AA seq 136 aa
MLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE
VIDKVQEETKSRSDRKPPGVGRGRGRGREDGAGGRQAKGVGRGLDDGSAKGVGGGRGRGG
SGGKPGGSRGGGRGRG
NT seq 411 nt   +upstreamnt  +downstreamnt
atgttagtagaactgaaaaatggggagacttacaatggacacttggtcaattgtgatact
tggatgaacatccatcttcgtgaagtcatctgtacatctaaggatggagatagattttgg
agaatgcctgaatgctatatccgggggaacacaattaagtatcttcgagttcctgatgag
gtgattgacaaagttcaggaagaaaccaagagtcgttcagatcgtaagccacctggggtc
ggtcgtggcagaggaagaggtagagaggatggtgctggtggaaggcaagcaaaaggcgtt
gggcgtggtctggatgatggtagtgctaagggagtgggtggaggccgaggcaggggtggg
tctggtggaaagcctggtggtagcagaggtggagggcgaggtcgaggatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (44)   

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