KEGG   Citrus sinensis (Valencia orange): 102630341
Entry
102630341         CDS       T02983                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102630341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102630341
Enzymes [BR:cit01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     102630341
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102630341
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 102630341
NCBI-ProteinID: XP_006474883
Position
9:complement(join(28603901..28604729,28605185..28605455,28605537..28605663,28605782..28605895,28606230..28606558,28607097..28607227,28607470..28607804))
AA seq 711 aa
MKKRWPITILYRAFSSSTTSTTASFPLKHVKKSNFDSALSSLRHHIQAADFVAIDLEMTG
ITSAPWRDSFEFDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQR
QELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYKDES
LDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDEGSEVQPSFNDSKQQFE
TIFFKMRPAISLNGFTSHQLRLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESVKK
MLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPL
TAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHL
SLQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLA
HNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH
LKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKESLDRNNDPISVL
HPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKEHES
LRKVKAVNSDPSCGERTKNKNFDDVSNDSSYSQLSSDEIIDSFYTREAKQI
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgaagaaacgatggccgattacgatactctatcgcgccttcagctcttcgacgacgtcg
acgacggcgtcgtttcctctaaaacacgtgaagaaatcaaacttcgactcggcgctcagc
tcgcttcgccaccacatccaggccgctgatttcgttgccatcgacctcgaaatgaccggc
atcaccagcgcaccgtggcgcgactccttcgagtttgaccgattcgatgttcgctacctc
aaggtaaaagattccgccgagaagttcgccgtcattcagttcggtgtatccccctttcgc
tgggacccactcaagcagtccttcatcacccatccacacaatttctttatatttcaacgt
caagaacttccacttgatggtgctgcttatgaattcctttgtcagacaacatcaatggat
ttcttggccaaataccagtttgatttcaatgcctgcattcatgaaggtgtatcttattta
tccagagaacaagaagataaagctcttaaacatgtgaattcaacatataaggatgagtca
ttggattcatggcatagtctaaaggaaattagagatactcatttgttcaacatacctgat
atcctctttgccgaaagaatgaaggacagattgagtgaatggcttggtggattgttgcgg
aatagagatgaaggttctgaagttcaaccaagttttaatgactcgaagcagcagtttgaa
accattttcttcaagatgcgtcctgctattagtctgaatggtttcacttctcatcaactt
cggttgattcaattggttgtaagaaagcatttcaaagatcttgcttatcttcgtgtcagt
ggggaaaattcttgttcacaaaacgttatagtgtatatagagtcagaaagtgtcaaaaag
atgctgatgaaagaagtgaaggatgaacaaaaaatagatgcagagatgagcatcaaagct
tctattggatttcgccatgttattgacttgctttcctcagagaagaagttgattgttggt
cacaattgcttccttgatattgcacatatttacagcaaattctttggtcctcttcctttg
actgctgaagaattcatttcctctgttaacaaatactttccgcacatcattgataccaaa
atattgttgaattcaaattctattcttcaacaaaggatgaagaaatctagcacttcattg
tccaaggcattttctgttttgtgtccacaaattgctcttggctctaaaagcactcatctg
tctcttcagccgtctgtgaaagtagaggttgaagtggatgatataaggtcatccaactgg
aactctggagtgaagcatgaagctggatatgatgcttttatgactgggtgcgtctttgcc
caagcatgcagtcaccttggtattgattttaaacaacagtcatcctctgaaaatttagct
cacaatgaaaagctccgggaacacgtcaaccttctgtatctcagttggactaatggagag
attatcaatctaagcactggaaataggacttctgagtctttggcctctaataagcgcaaa
aaccactacccaaagattttatttgagtgtattgttatagtatggggattcccatctcac
ctcaaggcttgggacattagagaatgcatctccaaagtctatggccctacctcagtgatt
tcagtctatcatgtggatgaaaccgcagttttcgtgcagttcagcagggcagaaatggtt
tccaaatttcttgatttgaaggaaagcttagatagaaataacgatccaatctcggttttg
catcctcttgcaaaattgctcgaaggtggaaatacctgtgctgctagctatgaaacttac
aaagaaatatgtagttcaactgtctcaaaagtcttatttgcggatcaagcaaaggcagtt
ggtatcaaatggaagaccaagttggtggaatcctcggataagaccaaagaacatgaaagt
ctccgtaaagtaaaagcagtgaattctgatccaagttgtggtgaaagaactaagaataag
aattttgatgatgtatcaaatgattcatcatacagccaattatcatctgatgagatcatt
gattccttttatacgcgggaggcaaagcagatttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system