KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100386689
Entry
100386689         CDS       T03264                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
  KO
K10610  DNA damage-binding protein 1
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03420  Nucleotide excision repair
cjc04120  Ubiquitin mediated proteolysis
cjc05161  Hepatitis B
cjc05170  Human immunodeficiency virus 1 infection
cjc05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100386689 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100386689 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    100386689 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    100386689 (DDB1)
   05161 Hepatitis B
    100386689 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cjc04121]
    100386689 (DDB1)
   03400 DNA repair and recombination proteins [BR:cjc03400]
    100386689 (DDB1)
Ubiquitin system [BR:cjc04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     100386689 (DDB1)
DNA repair and recombination proteins [BR:cjc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      100386689 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      100386689 (DDB1)
SSDB
Motif
Pfam: MMS1_N CPSF_A Beta_propel
Other DBs
NCBI-GeneID: 100386689
NCBI-ProteinID: XP_054096934
Ensembl: ENSCJAG00000019319
Position
11:complement(115070428..115105222)
AA seq 1109 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSLYPFQSHLL
TGKHILAYVAHAVTLPGSCYMSWLGSYTE
NT seq 3330 nt   +upstreamnt  +downstreamnt
atgtcttacaactacgtggtaaccgcccagaagcccaccgccgtgaacggctgcgtgacc
ggacactttacttcagctgaagacttaaacctgttgattgccaaaaacacgagattagag
atttatgtggtcaccgcggaggggcttcggcccgtcaaagaggtgggcatgtacgggaag
attgcggtcatggagcttttcaggcccaagggggagagcaaggacctgctgtttatcttg
acagcaaagtacaatgcctgcatcctggagtataagcagagtggcgaaagcattgacatc
attacgcgagcccatggcaatgttcaggaccgcattggccgcccctcagagactggcatt
attggcatcattgaccctgagtgccggatgattggcctgcgtctctatgatggccttttc
aaggttattcctctagatcgtgataataaagaactcaaggccttcaacattcgcctggag
gagctgcatgtcattgatgtcaagttcctgtatggttgccaagcacctactatttgcttt
gtctaccaggaccctcaggggcggcatgtgaaaacctatgaggtgtctctccgagaaaag
gagttcaataagggcccttggaaacaggaaaatgtagaagctgaagcttccatggtgatc
gcagtcccagaaccctttggaggggccatcatcattggacaggagtcaatcacctatcac
aatggtgacaaatatctggctattgctcctcctatcatcaagcaaagtaccattgtgtgc
cacaatcgagtggaccctaatggctcaagatacctgctgggagacatggaaggcagactt
ttcatgctgcttttggagaaggaggaacagatggatggcaccgtcactctcaaggatctc
cgtgtagaactcctgggagagacctctattgctgagtgcttgacataccttgataatggt
gttgtgtttgtcgggtctcgcctgggtgactcccagcttgtgaagctcaacgttgacagt
aatgaacaaggctcctacgtagtggccatggaaaccttcactaacctaggacccattgtg
gatatgtgtgtggtggacctggagaggcaggggcaggggcagctggtcacttgctctggg
gctttcaaggaaggttccttgcggatcattcggaatggaattggaattcacgagcatgcc
agcattgacttaccaggcatcaaaggattatggccactgcggtctgaccctaatcgtgag
actgatgacactttggtgctctcttttgtgggccagacaagagttctcatgttaaatgga
gaggaggtagaagaaaccgaactgatgggttttgtggatgatcagcagactttcttctgt
ggcaacgtggctcatcagcagcttatccagatcacttcagcatcggtgaggttggtctct
caagaacccaaagctctggtcagtgaatggaaggagcctcaggccaagaatatcagtgtg
gcctcctgcaacagcagccaggtggtggtggctgtgggcagggccctctactacctgcag
atccatcctcaggagctccggcagatcagccacacagagatggaacatgaagtggcctgc
ttggacatcaccccattaggggacagcaatggactgtcccctctttgtgccattggcctc
tggacagacatctcggctcgtattttaaagctgccttctttcgaactactgcacaaggag
atgctgggtggagagataattcctcgctccatcctgatgaccacctttgagagtagccac
tacctcctttgtgccttgggagacggagcacttttctactttgggctcaatattgagaca
ggtctgttgagcgatcgtaagaaggtgactctaggcacccagcccactgtattgaggact
ttccgttctctttctaccaccaacgtctttgcttgctctgaccgccccactgtcatctat
agcagcaaccacaaattggtcttctcaaacgtcaacctcaaggaagtgaactacatgtgt
cctctcaattcggatggctatcctgacagcctggcgcttgccaacaatagcacccttacc
atcggcaccattgatgagatccagaagctgcacattcgcacagttcccctctatgagtct
ccgaggaagatctgctaccaggaagtatcccaatgtttcggggtcctctccagccgcatt
gaagtccaagacacgagtgggggcacaacagctttgaggcccagtgcaagcacccaggct
ctgtccagcagtgtcagctccagcaagctattctccagcagtacagctcctcatgagacc
tcctttggagaagaggtggaggtgcacaacctacttatcattgaccaacacacctttgaa
gtgcttcatgctcaccagtttctgcagaatgaatatgccctcagcctggtctcctgcaaa
ctgggcaaagaccccaacacttacttcattgtgggcacagcaatggtgtatcctgaagag
gcagagcccaagcagggtcgcattgtggtctttcagtattcagatggaaaactacagact
gtggctgaaaaggaagtgaaaggggccgtgtactctatggtggaatttaacgggaagctg
ttagccagcatcaatagcacggtgcggctctatgagtggacaacagagaaggagctgcgc
actgagtgcaaccactacaacaacatcatggcgctctacctgaagaccaagggcgacttc
atcctggtgggcgacctcatgcgctcagtgctgctgctcgcctataagcccatggaagga
aactttgaagagattgctcgagactttaatcccaactggatgagtgctgtggaaattttg
gatgatgacaattttctgggggctgaaaatgcttttaacttgtttgtgtgtcaaaaggac
agcgctgccaccactgacgaggagcggcagcacctccaggaggttggtcttttccacctg
ggcgagtttgtcaatgtcttttgccatggctctctggtaatgcagaatctgggtgagact
tccacccccacacaaggctcggtgctcttcggcacggtcaacggcatgatagggctggtg
acctcactgtcagagagctggtacaacctcctgttggacatgcagaatcgactcaataaa
gtcatcaaaagtgtgggcaagattgagcactccttatatccttttcagagccatctgctt
actggaaagcacatcctggcatatgtggcacatgcagtcacattacccggaagctgttac
atgtcttggttaggttcctatacagaatag

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