KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100388330
Entry
100388330         CDS       T03264                                 
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03013  Nucleocytoplasmic transport
cjc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100388330 (UPF3B)
   03015 mRNA surveillance pathway
    100388330 (UPF3B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjc03019]
    100388330 (UPF3B)
Messenger RNA biogenesis [BR:cjc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     100388330 (UPF3B)
   mRNA cycle factors
    P-body specific factors
     100388330 (UPF3B)
SSDB
Motif
Pfam: Smg4_UPF3 RRM_1
Other DBs
NCBI-GeneID: 100388330
NCBI-ProteinID: XP_035144239
Position
X:complement(111790781..111814001)
AA seq 483 aa
MKEEKEHRPKEKRVTLLTPPGATGSGGGTSGDSSKGEDKQDRNKEKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL
DNKGQEYPAIVEFAPFQKAAKRKTKKRDTKVGTIDDDPEYRKFLESYAMDNEKMTSTPET
LLEEIEAKNRELIAKKTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIDRIPERDKLKDEPKIKVHRFLLQAVNQKNLLKKPEKGDEKESDKREK
AKKLDKENLSDERASGQSCTLPKRSDSEFKDEKPKRPEDESSRDYRERERDYERDQERIL
RERERLKRQEEERRRQKERYEKEKTFKRKEEEMKKEKETLRDKGKKAESTESLGSSEKTE
KKEEVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDSTKSGDSAVERKQESGISHRKEG
GEE
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgaaggaagaaaaggagcacaggcccaaggagaagcgagtaaccctgttaacgccccct
ggagccacaggcagcggtggtgggacttcgggggacagttccaagggggaagataaacag
gatcgcaacaaggagaagaaagaggcgctgagcaaggtggtaattcgaagattacctccc
actttgaccaaggagcaacttcaggaacatcttcaacctatgcctgaacatgattatttt
gagtttttttctaatgatacgagtctgtatcctcatatgtatgccagagcatacatcaac
tttaaaaaccaagaggacattattttgttcagggatcgctttgatggttatgtattcctt
gacaataaaggtcaggaatatcctgctatagtagaatttgcaccttttcaaaaagctgca
aaaaggaagactaagaaaagagataccaaagtcgggactattgatgatgatccagaatat
agaaagtttttggaaagttatgccatggataatgagaagatgacatctactccagagaca
ctgctagaggaaatagaagcaaaaaatagagaattaatagctaaaaagacaaccccactt
ttgagcttcctgaaaaacaagcagagaatgagagaagaaaagagagaagaaagaaggagg
agagaaatagaaagaaaaaggcaaagagaagaagagaggaggaaatggaaagaagaggag
aaacgaaaaaggaaagatatagaaaagctaaagaagatagacagaattccagaaagggac
aaattaaaggatgaaccaaagattaaggtacacaggtttctgttacaagctgtgaatcag
aaaaatctgctcaagaagccagaaaaaggagatgaaaaagaatcagacaaaagagaaaaa
gccaagaaattggacaaagagaatctgagtgatgaaagagccagtgggcaaagttgtaca
ttgcccaagcgttctgatagtgaatttaaagatgaaaaaccaaagagacctgaagatgag
agcagcagagactacagggagagggaacgggattatgaacgagatcaggagcgcatactt
cgagaaagagagaggctgaagcggcaagaagaagagcgccgtaggcagaaggaacgctat
gagaaagagaagacttttaagagaaaagaagaagaaatgaaaaaagagaaagaaacactt
cgggataaaggaaagaaggctgaaagtacagaatcattaggaagctcagaaaaaactgaa
aagaaagaagaagtggtcaagagagatcgaataagaaacaaggatcgtccagcaatgcag
ctttaccaaccaggagctcgaagccgaaatcgactctgtccccctgatgacagcaccaag
tctggtgattcagcagtagaaaggaagcaggaaagtggtattagccatagaaaagaagga
ggagaggagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (26)   

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