KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100404938
Entry
100404938         CDS       T03264                                 
Symbol
POLR1B
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2 isoform X1
  KO
K03002  DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100404938 (POLR1B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cjc03021]
    100404938 (POLR1B)
Enzymes [BR:cjc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100404938 (POLR1B)
Transcription machinery [BR:cjc03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     100404938 (POLR1B)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpa2_4 RNA_pol_Rpb2_2
Other DBs
NCBI-GeneID: 100404938
NCBI-ProteinID: XP_008978527
Ensembl: ENSCJAG00000016433
Position
14:complement(20033518..20071898)
AA seq 1135 aa
MDPCSRWRNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQA
IPPFEFAFKDQRISFTILDAVISPPTVPKGTICKEASVYPAECRGRRSTYRGKLTVDVNW
AVNGISKGIIKQSLGYVPIMVKSKLCNLHNLPPQALIQHHEEAEEMGGYFIINGIEKVIR
MLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVKEEHSAVNMNLHYLENGTVMLNFIY
RKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQV
LNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGE
CMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIVFDKKAQKTNLSMNTDNLMKIF
TMGLDLTKPFEYLLATGNLRSKTGLGLLQASGLCVVADKLNFIRYLSHFRCVHRGSDFAK
MRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTTSIPALLCNLGVT
PVDGAPHQPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPM
TGKPSLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIYEDEVFAGVTTHQE
LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSP
LVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID
LSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMY
YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVE
DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE
YFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDR
VTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPL
LEKPPPSWSAMRNRKYNCTLCHRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV
NT seq 3408 nt   +upstreamnt  +downstreamnt
atggatccctgcagccggtggcgaaaccttcccagtgggcctagcctaaagcacttgacc
gacccgtcttatggaatcccgcgggaacagcaaaaggcagcgttgcaggagctgacgcgg
gctcatgtggagtccttcaactatgctgtgcacgagggtctcggcctcgcggtgcaggct
atacctcccttcgaatttgctttcaaagatcaacgtatctctttcactattctggatgct
gttatcagtccacctacagttccaaaagggaccatctgcaaagaggccagtgtttatcca
gcagaatgccggggccgaaggagtacctatcgtgggaagttgacagtcgatgtcaactgg
gcagtgaatggaatctcaaaaggaatcattaagcagtctctgggctatgttcccatcatg
gtgaagtccaagctttgcaacttacacaaccttcccccacaagccctcattcagcaccat
gaggaggcagaggaaatggggggctattttataatcaatggcattgaaaaggtcatccga
atgttgattatgcctcggagaaattttcccattgcaatgataagaccaaaatggaaaacc
agagggcctggttatactcagtatggagtttcaatgcactgtgtgaaagaagaacattct
gctgtcaatatgaacctccactacttggaaaatggcactgttatgttgaactttatttac
cggaaagaactgttttttcttcctttgggatttgcacttaaggcacttgtcagcttttcc
gattatcagatctttcaggagctcatcaaaggaaaagaggatgattctttctttagaaac
tctgtttctcagatgttaaggattgtaatggaagagggttgttccacacagaaacaggtc
cttaactatctaggtgaatgcttcagagtaaagctcaatgttcctgactggtacccaaat
gagcaagctgcggagttcctgtttaaccagtgcatctgtatccacttgaaatccaatact
gaaaagttttatatgctttgtcttatgacacgaaagctctttgctttagccaaaggagag
tgcatggaggacaatcctgatagtttagtgaaccaagaagtccttacaccgggtcagctc
ttccttatgtttctgaaggaaaaactggaaggttggttagtgtctattaaaatagttttc
gataagaaggctcagaagaccaatttgtccatgaacactgacaatttgatgaagattttt
actatgggactagaccttacaaaaccatttgaataccttcttgctacagggaatctgcgt
tctaaaacaggtcttggcctcctacaagcatctggactttgtgttgtggctgacaagctg
aacttcatacgctatctctcccatttccgctgcgtgcacagagggtctgattttgccaag
atgaggaccaccacagtacgtagactgctgccagagtcttggggcttcttgtgtcccgtg
cacaccccagacggggagccctgtggcctgatgaaccacctaactgccgtatgtgaggtt
gtcacacagtttgtatatacgacatctattccagctttactctgcaacttgggggtcact
cctgttgatggagctccccaccaaccatacagtgagtgctaccctgtcctgctggacggc
gtcatggttggctgggtggataaggagcttgctccgggcattgcagattctcttcgtcat
tttaaggtgttgagagagaaaagaattcctccctggatggaagtggtccttatacccatg
acaggaaagccaagtctgtacccaggattgttcctttttaccactccttgtagactggta
cggcctgtgcagaacttggaattgggcaaagaagaactaattggaactatggaacagatc
ttcatgaatgtcgctatctatgaggatgaagtttttgctggagttaccacacaccaggaa
ctctttccacacagcctgctgagtgtgatcgccaacttcatccctttctctgatcacaac
cagagtccacggaacatgtaccagtgccagatgggtaaacaaactatgggctttccactt
ctcacttatcaagaccgatcagataacaaactgtatcgtcttcagactcctcagagtccc
ttggtgagaccctccatgtatgattattatgacatggataactatccaattgggaccaat
gccattgttgctgtgatttcttacactggctatgatatggaagatgccatgattgtgaat
aaggcctcttgggaacgaggctttgcccatggaagtgtctacaagtctgagttcatagac
ctctctgaaaaaattaaacaaggagatagtagcctggtgtttggaatcaaacctggtgac
ccacgggttttgcagaagttagatgatgatgggctgccatttataggagcaaaactgcag
tatggagatccgtattacagctacctaaacctcaacactggggaaagttttgtgatgtac
tataagagtaaagaaaattgtgttgtggataacatcaaagtgtgcagtaatgacactggg
agtggaaaattcaagtgtgtttgcatcactatgagagtgcctcggaacccaactattgga
gataaatttgccagtcgtcatgggcagaagggcattttgagtagattgtggccagttgag
gacatgccttttactgagagtgggatggtcccagacattctgttcaatccccatggtttt
ccatcccgcatgaccatcgggatgttaattgagagtatggctggtaagtctgcagctttg
catggtctctgccatgatgctacacccttcatcttctcagaggagaactcagccttagaa
tactttggtgagatgttaaaagctgctggctacaatttctatggcactgagaggttatat
agtggcatcagtggactggaactggaagcagacatcttcataggagtggtttattatcag
cgcttacgccacatggtctcagacaagtttcaagtaaggacaactggagcccgagacaga
gtcaccaaccagcctattggtggaagaaatgtccagggtggaatccgttttggggagatg
gaacgggatgcgcttttagctcacggtacatcttttctccttcatgaccgcctcttcaac
tgctcagatcggtcagtagcccacgtgtgtgtgaagtgtggcagtttactctctccactg
ttggagaagccacccccttcttggtctgccatgcgcaatagaaaatacaactgtactctg
tgtcatcgcagtgacactatcgatactgtttctgtgccttatgtttttcggtattttgta
gctgaactggcagctatgaacatcaaagtgaaactggatgttgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (6)   
   Pfam (6)   
All databases (35)   

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