KEGG C.jejuni: Cj0478

Campylobacter jejuni NCTC11168: Cj0478

Entry

Cj0478 CDS C.jejuni

Gene name rpoB

Definition DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Pathway cje00230 Purine metabolism
cje00240 Pyrimidine metabolism
cje01100 Metabolic pathways
cje03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:cje00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:cje00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:cje03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7
RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 218562133
NCBI-GeneID: 904806
Sanger: Cj0478
GeneDB: Cj0478
UniProt: Q46124

Position 438992..443128

AA seq 1378 aa
MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLDNGESGIEKVFKSIFPI
HDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKD
IKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQII
PDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKKQDIIKLFYPIQTIHVKKDKF
LTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKKAEQLIKDGLKWIEYPVEILLNRYL
ANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSFDIANDLANGVDAAIINSFAQDGETLK
LLKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNH
KLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLG
LAKMQKAIRDKFTSLNADLDKVMPYDLINPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT
HKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNELG
FVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILA
RREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGME
QIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHP
IVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFT
SVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSP
KGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSY
DKEKMALEKEHHDRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKI
NRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVK
VYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQ
ILESHLGLVGLRLGDQIQEIFDRKQKDFLKELRAKILEICSIPRLANEKEFIKSLSDEEL
LNYARDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGC
MYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE

NT seq 4137 nt +upstreamnt +downstreamnt
atgtgcgatatgttagataataaattaggaaatcgtttaagagtagacttctcaaacatt
tcaaaacaaatagaaatcccaaatcttctacaattacaaaaaaagagttttgattatttt
ttaaatcttgataatggtgaaagtggtatagaaaaagtttttaaatcaatttttcctatt
catgatccgcaaaatagattgagtcttgaatatgttagtagtgaaataggcaagccaaaa
tataccattcgcgaatgcatggaaagaggtttgacttattctgtaaatttaaaaatgaaa
atccgtcttactctgcatgaaaaagatgaaaaaacaggggaaaaagttggcgtaaaagat
attaaagaacaagaaatttatatccgcgaaattcctttaatgacagatcgtgtatctttt
atcattaacggggttgagagagtggttgtaaatcaattacatagaagccctggtgttatt
tttaaagaagaagaaagttcaacggttgcaaataagcttgtttatacagcacaaattatt
cctgatcgtggttcgtggctttattttgaatacgatgccaaagatgttttgtatgtaaga
atcaataagcgtagaaaagttcctgtaactatgctttttagagctttagggtataaaaaa
caagatattattaagttgttttatcctattcagactatacatgtgaaaaaagataaattt
ttaacagaatttaatccaaatgattttatggatagaatagaatatgatattaaagatgaa
aaaggaaaaatcgttcatcaagctggaaaaagacttacaaagaaaaaagcagaacagctt
attaaagacggtttaaaatggatagaatatcctgtagaaattttacttaatcgttattta
gcaaatcctattattgataaagaaagtggagaggttttatttgattctttaactttgtta
gatgagagtaagcttgctaagattaaagagcaaaaaagttttgatatagcaaatgacttg
gctaatggcgttgatgcagcgattattaactcctttgcccaagatggagaaactctaaaa
cttcttaaacaaagtgaaaatatcgatgatgaaaatgatttagctgcgattagaatttac
aaagttatgcgcccaggtgaacctgtggtaaaagatgcagcgaaggcttttgtaaatgat
ttattcttcaatcctgaaagatacgatcttaccaaggtaggtcgtatgaaaatgaaccat
aaattaggtcttgaagtacctgagtatgttactgttttgactaatgaagatattattaaa
actgcaaaatatttaattaaagtaaaaaatggtaaaggacatattgatgatagagatcat
ttaggaaatcgtcgtatccgttctataggtgaacttttagccaatgaacttcatttaggt
cttgcaaaaatgcaaaaggcgatcagagataaatttacttctttaaatgcggatcttgat
aaagtaatgccttatgatttaatcaatcctaaaatgattactacaactatcattgaattt
tttacaggaggtcagctttcgcaatttatggatcaaaccaaccctttaagcgaggttact
cataagcgtcgtttgtcagcgcttggtgaaggtggacttgtaaaagaaagagcaggtttt
gaagtgcgtgatgttcacgcgacacattatggtagaatttgtccagttgaaacacctgaa
ggtcaaaatattggtttgattaacactctttctacttatgcaaaagtaaatgaacttggc
tttgttgaagcgccatatagaaaagttgtaaatggtaaagtgactaatgaagttgtttat
cttacagcgacacaagaagaaggcttgtttatcgcaccagcttcaactaaggttgatgct
aaaggcaatatagtagaagaatttgttgaggctaggcaagatggtgaaactatacttgca
agacgcgaagaagtgcaattaatcgatctttgctcaggtatggttgttggagttgcagct
tctttgattccgtttttagagcacgatgatgcaaacagagcgctaatgggttcaaacatg
caacgtcaagctgtgccacttcttactgcttcagctccgatagtaggaacaggtatggaa
caaattattgcgcgtgatgcttgggaagctgttaaagcaaagcgtggcggtgtggttgag
aaagtggataataaaagcattttcattttaggtgaagatgataaaggtccatttattgac
cattacactatggagaaaaatttaagaaccaatcaaaatacaaattatattcaacaccct
attgttaaaaaaggtgatatagtaaaagcaggacaaattatcgcagatggtccttctatg
gatcaaggcgaacttgctataggtaaaaatgctttaatcgcttttatgccttggaatggt
tataactatgaggatgctatagttgtaagtgagagaattattcgtgaagatacttttaca
agcgtgcacatttatgaaaaagaaattgaagcaagagaactaaaagacggtatagaagaa
attaccaaagatattccaaatgtaaaagaagaagatgttgcgcatcttgatgagagcggt
attgcaaaaattggtacccatatcaaaccaggtatgattttggtgggtaaggtttctcca
aaaggtgaggttaaaccaactcctgaagaaagacttttaagagcgatttttggagaaaaa
gcaggacatgttgtgaataaatccctttatgcaaccgcttctttagagggtgttgttgtg
gatgttaaaattttcactaaaaaaggctatgaaaaagatgatcgcgcaataaaatcttat
gataaagaaaaaatggctttagaaaaagagcatcatgatagacttttgatgatggataga
gaagaaatgcttcgtgtttgtgctcttctttccaaagcctctttaaatagcgatcaaaaa
attggagataaaaattataaaaaaggacaaactgcagatattagcgaacttgaaaaaatc
aatcgttttactttaacaactttgattaaagcttattctaaagagattcaaaaagaatac
gatgatttaaaaaatcatttccaaaatgagaagaaaaaattaaaagcagaacacgatgaa
aagcttgaaattttagaaaaagatgatattttaccaagtggggtaattaagcttgttaaa
gtttatattgctacaaaaagaaagcttaaagtcggtgataaaatggcaggacgtcatgga
aataaaggtatagtttcaactatagttcctgaagtagatatgccttatttgccaaatggt
aagagcgtggatattgcgcttaatccacttggcgttccaagtcgtatgaatataggtcaa
attttagaaagtcatttaggtttagttggacttagacttggggatcaaattcaagaaatt
tttgatagaaagcaaaaagattttcttaaagaattaagagcgaaaatacttgaaatttgt
tctattccaagacttgcaaacgaaaaagaatttattaaaagcttaagcgatgaagagctt
ttaaactatgctagagactggagtaaaggagttaaattttctactcctgtttttgaaggt
gtaaatatagaagaatttagcaagctttttaaaatggctaagatagatatggatggcaaa
acagaactttatgatggacgcacgggggaaaaaattgcagagcgtgttcatgtaggatgt
atgtatatgctaaaactccatcacttggttgatgaaaaagttcatgcaagaagtacagga
ccttatagcttggttacccaacaacctgtgggtggtaaagcactctttgggggacaaaga
tttggagaaatggaagtttgggcacttgaagcttatggagcggctcacactttaagagaa
atgttaaccataaaatcagatgatgtagaaggtagatttagtgcctataaagcattgaca
aaaggtgaaaatgttccagcaacaggaattcctgaaacattttttgtattaaccaatgag
cttaaatctcttgctttagatgttgagatttttgataaggatgaagataatgagtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   GENEDB-CJE (1)   
   SANGER-CJE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
All databases (23)

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