KEGG   Coturnix japonica (Japanese quail): 107308252
Entry
107308252         CDS       T04297                                 
Symbol
HMGB1
Name
(RefSeq) LOW QUALITY PROTEIN: high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
cjo  Coturnix japonica (Japanese quail)
Pathway
cjo03410  Base excision repair
cjo04140  Autophagy - animal
cjo04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    107308252 (HMGB1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    107308252 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    107308252 (HMGB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cjo03036]
    107308252 (HMGB1)
   03400 DNA repair and recombination proteins [BR:cjo03400]
    107308252 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cjo04147]
    107308252 (HMGB1)
Chromosome and associated proteins [BR:cjo03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    107308252 (HMGB1)
DNA repair and recombination proteins [BR:cjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     107308252 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     107308252 (HMGB1)
Exosome [BR:cjo04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   107308252 (HMGB1)
SSDB
Motif
Pfam: HMG_box_2 HMG_box Cwf_Cwc_15 Astro_capsid_p
Other DBs
NCBI-GeneID: 107308252
NCBI-ProteinID: XP_015707497
Position
1:156669258..156677540
AA seq 252 aa
MGKGDPKKPKGKMSAYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKF
EDMAKADKLRYEKEMKNYVPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL
SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDIAAYRAKGKVDAGKKVVAKAEK
RKMKXEEEDDEDDEDDEEDEEEDDDDDEEDXEDEEDDGGRKMRKMMKKRKMRRRKMMMMM
NKSLLEQFLSCL
NT seq 759 nt   +upstreamnt  +downstreamnt
atgggcaaaggtgatcctaagaagcccaagggcaagatgtctgcctacgccttctttgtg
cagacgtgccgtgaggagcacaagaagaaacatccagatgcttcagtgaacttctcagag
ttctcaaaaaaatgctcagaacgatggaagactatgtcttctaaggagaaagggaagttt
gaggatatggcaaaggcggacaagcttcgttatgaaaaagaaatgaaaaactatgtacca
cctaagggggaaacaaaaaagaagttcaaggatccaaatgcaccgaagaggcctccttcg
gcttttttcttgttttgctctgagtttcgtcccaaaatcaaaggagaacatcctgggctg
tccattggggacgtagcaaagaagcttggtgagatgtggaacaacctcagcgatggtgaa
aagcagccttataacaataaggctgctaagctgaaggagaagtatgagaaggatattgct
gcataccgggccaaagggaaggttgatgcgggcaaaaaagtagttgccaaggctgagaag
aggaagatgaagnatgaagaggaagatgatgaagatgatgaagatgatgaagaagatgag
gaggaagatgatgatgatgatgaagaagactnggaagatgaggaagatgatggtgggagg
aagatgaggaagatgatgaagaagaggaagatgaggaggaggaagatgatgatgatgatg
aataagtctcttttagagcaatttctttcttgtctataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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