KEGG   Coturnix japonica (Japanese quail): 107321464
Entry
107321464         CDS       T04297                                 
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X2
  KO
K10756  replication factor C subunit 3/5
Organism
cjo  Coturnix japonica (Japanese quail)
Pathway
cjo03030  DNA replication
cjo03410  Base excision repair
cjo03420  Nucleotide excision repair
cjo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107321464 (RFC5)
   03410 Base excision repair
    107321464 (RFC5)
   03420 Nucleotide excision repair
    107321464 (RFC5)
   03430 Mismatch repair
    107321464 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cjo03032]
    107321464 (RFC5)
   03036 Chromosome and associated proteins [BR:cjo03036]
    107321464 (RFC5)
   03400 DNA repair and recombination proteins [BR:cjo03400]
    107321464 (RFC5)
DNA replication proteins [BR:cjo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    107321464 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    107321464 (RFC5)
Chromosome and associated proteins [BR:cjo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    107321464 (RFC5)
DNA repair and recombination proteins [BR:cjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     107321464 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    107321464 (RFC5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_22 AAA_16 AAA_11 AAA_24 AAA_assoc_2 DEAD AAA_14 ResIII RuvB_N DUF815 AAA_5 DNA_pol3_delta AAA_19 AAA_30 PhoH AAA_7 ATPase_2 TIP49 TniB nSTAND3 AAA_25 Gp44_lid Mg_chelatase bpMoxR AAA_3 Thioredoxin_6 AAA_18 Hydantoinase_B
Other DBs
NCBI-GeneID: 107321464
NCBI-ProteinID: XP_015733878
Position
15:complement(10011738..10014330)
AA seq 329 aa
MAGPSGRNLPWVEKYRPRALSELVSHRDILSTIQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREKEFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVSEDGMKALVTLSSGDMRRALNVLQSTSMAFGKVTEENVYTCTGHPLKADIANIL
DWMLNQNFSTAYHKIMELKTLKGLALQDILTEIHLFVHRVDFPPSVRIQLLIKMADIEYR
LAAGTSEKVQLSSLIAAFQDTRDLIVAEA
NT seq 990 nt   +upstreamnt  +downstreamnt
atggcgggaccgagcgggaggaacctgccgtgggtggagaagtaccggccgcgggcgctg
tcggagctggtgtcgcaccgggacatcctcagcaccatccagcggttcatcagtgaggac
cggctgccccacctgctgctctacggcccccccggcaccgggaagacctccaccatcctg
gcatgtgcacggcagctctaccgcgagaaggagttcagctctatggtgttggagctgaat
gcatcggacgaccgcggcattgacatcgtgcgagggcccatcctgagctttgccagcacc
aggaccatcttcaagaaaggcttcaagctcgtcatcctggatgaagctgatgccatgaca
caggatgcacagaacgctctgcgccgagtgattgagaagttcactgagaacactcgcttc
tgcctcatctgcaactacctctccaagatcatcccagccctgcagtcccgctgcacccgc
ttccgcttcgggcccctcacccccgagctgatggtgcctcggttgcagcacgtcatccag
gaggagggggtggacgtgagtgaggatgggatgaaggcgctggtgacgctctcgagcggt
gacatgcgcagagccctcaacgtcctgcagagcacctccatggcctttgggaaggtgaca
gaggagaatgtctacacctgcacaggacatcccctcaaggccgacatcgccaacatcctc
gactggatgctcaaccagaacttctccactgcctatcacaaaatcatggagctgaagaca
ctgaagggcctggctctgcaggacatcctcaccgagatccacctctttgtgcacagagtt
gatttcccaccctcagtccgcatccagctgctgatcaagatggcagacattgagtaccgg
ctggctgcaggcaccagcgagaaggtgcagctgagctccctcatcgcagcgttccaggac
accagggacctgattgtggctgaagcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (32)   
   Pfam (32)   
All databases (49)   

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