KEGG   Coturnix japonica (Japanese quail): 107321683
Entry
107321683         CDS       T04297                                 
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
cjo  Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:cjo00536]
    107321683 (COL27A1)
Glycosaminoglycan binding proteins [BR:cjo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   107321683 (COL27A1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_1 Laminin_G_3
Other DBs
NCBI-GeneID: 107321683
NCBI-ProteinID: XP_032304016
Position
17:1459417..1487585
AA seq 1859 aa
MRCGALVLALLCALPLGATGLELPETGSGLQEDEVNLLDKMTSHAQDLSNVSFSSDEANC
STLQIGQYSTLSIPTQEVFGDRFADELSVLMKLRYSLQEDTSLVTILSHRSHVLFQIRVS
PYGLIFVTTRRRHYEFPVSLLSDGRWHRVALSISQESLELYVDCRLVERASWPGYLGMGV
STEGLLVIGGLVESFEIPFEGALQQLTFVMGDAAAAGEHCHNHAVICARSSGISPPPRDH
SATRPEVPKETNEIQGSSTQDSKHPHSDLTLGPHWTWKGAQETLSLHPDGNARTLFSAAE
VPTSEEQEEEEGSLSIEDEGFELLNFTYNKITGPGRPGISRSRPRIIGIPGPSAKKEQAS
DPGQEDNVTTEKLKGNADTHLHLPPIKPGGATKPIASSKVSPLRHQAAAPKGSSGVVAGH
PEHPHTPLGHPILPSVRGYWAHVKPGPPGLPGPPGLPGCPGRRGLVGPKGDKGHAGAMGR
MGPPGDPGPMGIPGIPTVVLWRNSREDWLSFTQSSFYQLLHSGWPRKPGAPGPPGHPGKA
GMPGLCGEPGEPGQKGHRGYMGKPGLQGWPGRAGQPGLDGSPGLGGRPGLCGLPGEQGLQ
GFRGDRGLAGEKGDEGFLGDPGPPGERGEKGMKGVKGESGLPGPAGAHGMAGLKGAMGFQ
GPAGPEGEGGSVGASGPAGPVGQPGQPGSVGCQGVNGSQGEMGPPGLPGPRGPKGPQGLQ
GQRGPPGLGGVQGSAGMEGSSGPKGDTGTEGVPGMRGQPGQEGLVGFIGLPGSKGIQGEK
GCRGPSGAKGDLGAKGSKGLHGAPGAVGPPGLRGQMGSMGFPGPRGAAGPQGPEGEEGQM
GPVGLNSSEGPKGGRGPDGPKGMPGPRGARGRGGQRGLVGVPGAPGSKGIPGAEGTEGKP
GIQGPPGAVGSPGRMGAPVSRAARPSASLQSIHISVLLLQLRAWLCALGVVLSKGFLTLT
LLRSFSIPCASVFVLPLCLPSSCSSPFHPELILCPSPQGFVGVQGGRGHAGPPGPTGPQG
KPGADGDQGCMGPKGLPGKPGLEGPQGPVGMYGYPGLAGDRGKPGHRGQKGEAGARGLPG
FPGKAGPKAPPGPPGPRGAPGSQGRAGEPGPRGLPGLRGAPGVRGLHGVPGKPGLVGEMG
APGAAGAAGPPGYPGQEGLRGPEGPSGMRGEQGVPGDPGEVGVSGLDGEQGPPGPVGAEG
RPGLKGQQGDAGPRGAPGVSGACGERGERGPTGLPGGAGQQGKEGDVGDAGELGEPGLRG
QKGDAGPRGPTGAPGLGAAPGEDGEKGRKGEKGREGLLGQLGVRGAAGPVGSQGRSGGTG
LRGPPGLHGLEGVKGDAGPCGRDGAAGAAGLEGPAGEDGAKGDRGHPGPMGSVGARGQPG
GPGFKGYIGHRGAGGAAGTRGQPGRKGPIGPPGNVGVPGAGGIEGLMGVKGEPGTVGEPG
HMGSPGQAGPQGQKGHKGEKGDVGQEGPEGAAGEAGRRGKRGKVGHRAHRGPRGPKGHQG
DEGLAGPQGLQGLYGIPGLKGFRGDPGHKGPKGEKGSRGHLGQPGDDGFKGKHGPQGTPG
QPGPKGEQGDTGPPGPRGLPGLPGKLGLPGQKGLKGFPGHPGTRGKPGPPGLAGPPGPSG
PALMLSEEELWHLIYPVDCLNRSTVLDLLDNMSRELRALVEHPDGTKDKPAATCKELLLA
HPNLPDGHYYIDPNQGSPRDALVAFCNFTAGGETCIPPVHNQVPIKAWLNSYTSTHSFEW
FSALPGGFMLDYTGASVVQLRFLRLHSHRAAQKVSYSCRPIPHHRQPQKEIRFLADTREQ
SYVATLQGCLLDNDSSITDTIFHFVTEELTLLPLRDLAVFHDGDASHQFGFTIGPVCFS
NT seq 5580 nt   +upstreamnt  +downstreamnt
atgcgctgcggggcgctggttctggcgctgctctgcgctttgcccctgggagcgacgggg
ctggagcttcccgaaacgggctcagggctgcaggaagatgaagtgaacctgctggataaa
atgacttcccatgcacaggacctcagcaatgtttccttcagctccgatgaggccaattgc
agcacactgcagatcgggcagtactccaccctcagcattccaacacaggaggtgtttggg
gacaggtttgcagacgagctgagtgtgctgatgaagctcaggtactcattacaggaggac
accagcctggtgaccatcctgagccatcggagccatgtgctcttccagatccgggttagc
ccatatggcttgatctttgtcaccacaaggaggagacactatgagttccctgtttccctg
ctcagtgatgggcgctggcatagagttgctctcagcatctcccaggagagcctggagctg
tatgtggattgtcggctggtggagagagccagctggcctggctacctggggatgggtgtg
agcaccgaggggctgctcgtcatcggaggtctggtggagtcctttgagatcccctttgag
ggtgctctgcagcagctgacctttgtgatgggggatgcagcagcagctggtgagcattgc
cacaaccacgctgtgatatgtgcacgctcctctggcatcagtcctcctccaagggaccac
tctgcaacaaggccagaggtaccaaaagaaaccaatgagatccaggggtcatcaactcag
gattccaaacacccccattcagatttgaccttgggcccacattggacatggaagggtgcc
caggagacccttagcctgcatccagatgggaacgcccggactttgttctctgctgctgag
gtgccaacatctgaagagcaggaggaagaagagggaagcctttctattgaggatgaaggc
tttgagctgttgaacttcacctataataaaatcactggccctggcaggccaggaatcagc
aggagcagaccacggatcattggcatccccgggccatcagccaagaaagaacaagcctct
gaccctgggcaggaggataatgtcaccacggagaagctgaagggcaatgcagacacccac
cttcacctcccacccatcaaacctggcggtgccaccaagcccattgcctcctccaaagtg
tccccattgagacaccaggcagctgcacccaagggttcctcaggggtggttgcagggcat
ccagagcatcctcacacccccctgggtcaccccatcttgccatcagtacgtggatattgg
gctcatgtgaagccaggacccccagggctgccgggacctccagggctgccaggatgccct
gggagacgtggacttgtgggccccaaaggagacaaaggtcacgctggagccatggggcgg
atgggacccccaggtgacccaggtcctatgggcatccctggcatccccactgttgttcta
tggaggaactcccgtgaggactggctgagcttcacgcaatcatccttttaccagctgctg
cactctggctggccgagaaaacccggagcccccggccctccagggcacccagggaaagca
ggcatgccggggctgtgtggagagccgggagagccggggcagaagggccatcgggggtac
atgggcaaaccagggctgcagggctggccaggtcgtgcagggcagcctggcttggatggg
tcccctggcttggggggcagacctgggctgtgtgggctgcctggtgagcaggggctgcag
ggcttccgtggggaccgggggctggctggtgagaagggagatgagggcttcttgggtgac
cctggacctcctggggagagaggcgagaagggaatgaagggggtgaaaggggagagtggc
ctgcctggtcctgctggggctcacgggatggcaggtctgaagggtgcgatgggcttccag
ggccctgctgggccagagggagaaggtggttcagtgggtgcctcaggccctgctggcccc
gtgggccagccaggccagccaggctctgtagggtgccaaggagtcaatggctctcaggga
gagatgggtcctcctggcttgcctggcccccgtggacccaaagggccacagggcttgcag
gggcaacgtggcccccctggcctggggggtgtgcagggttctgctgggatggagggatcc
tccggtcccaaaggagacactggcacagagggggtccctggaatgagaggtcaaccagga
caggagggacttgtggggtttattggcctgccagggtccaagggcatccaaggagagaag
ggctgccggggtcccagtggagccaagggagacctgggagctaaaggaagcaagggtctg
catggagcaccaggagctgtgggacccccagggctgcggggccagatgggctcaatgggc
ttccctggaccccgtggggcagcgggaccacagggacctgagggagaagaagggcagatg
ggtccagtggggctgaacagcagcgaaggaccgaagggaggccgaggacccgatggcccc
aagggaatgccaggaccacggggtgccaggggccgtgggggccagcgtggactggttgga
gtcccaggagcgcctggctcaaaaggcatccctggagcagaaggcacagaaggaaagcct
ggtatacagggtccccccggggctgtgggcagcccaggcaggatgggagcaccagtgagt
agagctgctcgtccttctgcctctttacagtctatccacatctctgtccttcttctgcag
ctccgtgcctggctctgtgcccttggggttgtgctctcaaagggtttcctaacactcact
ctgctgaggagtttctccattccctgtgcttctgtgtttgttctccctctctgtctgcca
tcctcatgctcctctccctttcatccagagctcatcctctgcccttccccacagggcttt
gttggtgtgcaagggggcagagggcatgcaggacctcctggacccacagggccccaagga
aaacctggagctgatggagaccagggttgcatgggtccaaagggtctgcctgggaaacct
ggcttggagggaccacaggggccagtcggcatgtatggctacccaggactggctggagac
cgtgggaagccagggcacaggggacaaaagggagaagctggagcccgaggtctaccagga
ttccctggaaaagctggtcccaaggccccaccaggcccccccggcccacgaggtgctcct
ggctcccagggcagagcaggagagccgggtcctcgggggctcccagggctgcggggagct
cctggtgtgcgggggctgcatggcgtgcctgggaagcccggcttagtgggggaaatggga
gcacctggagcagcaggggctgctggcccccctgggtacccgggccaggaaggtctgaga
ggacccgaggggccttcagggatgcgaggcgagcagggtgttccaggggatcccggtgaa
gttggtgttagtgggctggatggtgagcagggaccaccaggacctgtaggagccgagggg
cgaccagggcttaagggccagcagggtgatgcaggacctcgtggagctccgggcgtcagc
ggtgcttgcggggagcgaggggaacgtgggccaacagggctgccagggggagctgggcag
caggggaaggagggggatgttggtgatgctggagagctgggtgagccgggattacgggga
caaaagggagatgctggaccacggggcccaactggagcaccgggactgggagctgcacca
ggggaggatggagagaaaggtcgcaaaggagagaagggccgggaggggctgctgggccag
ctcggtgtcagaggtgctgcaggacctgtcggatcccagggacgctctggtgggacgggg
ctgcgaggcccccctgggctccatggattggaaggagtgaagggtgatgcaggaccctgc
ggcagggatggagctgccggagcagctgggctggagggacctgcaggagaggatggagca
aagggagaccgtggccatcctggccctatgggctcagtgggtgcacgtgggcagccgggt
ggccctggcttcaagggctacattggacacagaggagctgggggagctgcaggaacacgg
gggcagccgggcagaaagggtcctattgggcctccaggcaatgttggagtgccaggggct
ggtggcattgagggcctcatgggtgttaaaggggagccaggcacagtgggagaaccaggg
cacatgggctctccaggacaagctggtccccaagggcagaaaggtcacaaaggagaaaag
ggtgatgtggggcaggaagggccagaaggagctgctggagaagctggcagacggggcaag
cgaggcaaggtggggcaccgggcccataggggaccccgcggacccaagggccatcaaggc
gacgaggggctggcagggccccagggactacaaggactatatggcatccctgggctgaag
ggcttcagaggagaccccggacacaaaggacccaagggtgagaagggcagcaggggccac
ctggggcagccaggggacgatggcttcaagggcaagcacggaccacagggcactcctggg
caaccagggcccaagggagagcagggtgacactggcccccctggcccacggggtctgcct
gggctccctgggaagctgggcttgccaggacagaagggactgaaaggtttcccgggtcac
ccaggcaccaggggcaaaccaggaccaccggggctggctggtccccctggtcccagcggg
ccagcactgatgttatctgaggaggagctatggcacctgatttatcctgtcgactgcctg
aaccgtagcacagtgctggacctgctggacaacatgagccgtgagctgagagctctcgtt
gagcatcctgatggaaccaaggacaaacctgcagccacctgcaaggagctgctgctggcc
caccccaacctgcccgatgggcattactacattgaccccaaccagggaagccctcgcgat
gcccttgtggccttctgcaacttcacagcagggggtgagacctgcataccccccgtgcac
aaccaggtccctatcaaagcctggctgaactcctacacctctacacacagctttgagtgg
ttcagtgctctgcctgggggcttcatgctggactacacaggggccagcgtggtgcagctg
cgcttcctgcgcctgcacagccatagggctgcacagaaggtctcctattcctgccgcccc
attccccaccaccgacagccccagaaggaaatccgctttctggctgacacccgggagcag
agctacgtggccacactgcagggctgcctgctggacaacgactcctccatcactgacacc
atcttccactttgtgacggaggagctgactctgctgcccctacgggacctggctgtgttc
cacgacggcgatgcctcgcaccaatttgggttcaccatcggccccgtctgcttcagctga

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