KEGG   Coturnix japonica (Japanese quail): 107322947
Entry
107322947         CDS       T04297                                 
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
cjo  Coturnix japonica (Japanese quail)
Pathway
cjo03015  mRNA surveillance pathway
cjo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cjo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107322947 (PABPC1L)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107322947 (PABPC1L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjo03019]
    107322947 (PABPC1L)
   03041 Spliceosome [BR:cjo03041]
    107322947 (PABPC1L)
Messenger RNA biogenesis [BR:cjo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     107322947 (PABPC1L)
   mRNA cycle factors
    Stress granule specific factors
     107322947 (PABPC1L)
Spliceosome [BR:cjo03041]
 Complex C
  Other components
   Complex C specific factors
    107322947 (PABPC1L)
SSDB
Motif
Pfam: RRM_1 PABP Nup35_RRM RRM_occluded DUF6262
Other DBs
NCBI-GeneID: 107322947
NCBI-ProteinID: XP_015736999
UniProt: A0A8C2UF09
Position
20:complement(4591923..4600815)
AA seq 633 aa
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSSGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKERE
AEFGARALEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSRGFGFVNFEK
HEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPPIPQPQTRAAF
YSPSPVVPVRPATRWSAQPSRPPSAYPAATPILRAAVQPRRLLTNISTTRQASTQVPRVP
PQAQRVANIGTQTINARVPSSPTMRGVPQYKYSLAVRNIQPMGSVPPGVQQVVEPAVHIQ
GQEPLTASVLAAAPPQEQKQMIGERLYPLIHAMHSSLAGKITGMLLEIDNSELLLLLESP
ESLHSKIEEAVAVLQAHQATEVSHKGSTAPFPQ
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgaacgccagtggccccggctacccgttggcctctctctacgtgggggacctccaccct
gacgtgaccgaagccatgctctatgagaagttctcacctgctgggcccatcctgtccatc
cgggtgtgtcgggatgttgcctctcgccgatctctgggctatgcctacatcaacttccag
cagccggcagatgctgagcgagccctggacaccatgaacttcgaagtgatcaagggccga
cctgtccgaatcatgtggtcccagcgagaccctgggctcaggaagtcaggggttggaaat
gtctttatcaagaatctggatgactccattgataacaaagccctttacgatacattctcg
gcctttgggaacatcctgtcctgcaaggtggtttgtgatgaaaatggatccagtggccat
ggatttgtacattttgagacacaagaagctgcaactcgggccatccagaccatgaatggg
atgctcctcaatgaccgcaaagtctttgttggccactttaaatcccgcaaagagcgtgag
gcagagtttggggctcgggcactggagttcaccaacgtctacatcaaaaactttggggat
gatatggatgataacagactgcgggaaatattctccaggtttggaaagacactgagcgtc
aaagtcatgatggacaacactggccgctccaggggctttgggttcgtgaactttgagaaa
catgaagaagcccagaaggctgtggctgacatgaatggaaaggagatcaatgggcggatg
gtgtacgtgggccgggcgcagaagcggctggagcggcagagtgagctgaaacggaaattt
gagcagatgaagcaggagcgagtgagcaggtaccagggggtcaacctgtatgtgaagaac
ctggatgatgggatagatgacgagcggctgaggaaggaattctctccttatggcaccatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttggctttgtatgtttt
tcctctccagaagaggctaccaaggccgtgacagaaatgaatggacggattgttagcact
aagcctctctacgttgcactcgcacaaaggaaagaggagaggaaagcaattctcaccaac
cagtacatgcagcggttggccaccatgagggcactgcctggccctttccttggctccttt
cagcctcccccagggtatttcctcccccccatccctcagccgcaaaccagagctgctttc
tacagccccagcccagttgtccctgtccgtcctgccactcgctggagtgcgcagccctcc
cggcctccctcagcgtaccctgcagccacccccatcctgagggctgctgtgcagccccgg
cgcctgctgaccaacattagcaccacgagacaggcgtccacccaagtgcctcgtgtgccc
ccccaggcgcagagagtggccaacatagggacgcagacgatcaatgcccgggtgccctcc
tcgcccaccatgcggggtgtcccgcagtacaagtactccctggctgtgaggaacatccag
cccatgggcagcgtgccacctggagttcagcaggtggtagaacctgctgtgcatatccaa
gggcaggagccactgacagcatccgtgcttgcagcagcccctccacaggagcagaagcaa
atgataggtgaacggctctaccccctgatccatgcaatgcactcctcgttggctggcaag
atcacaggcatgctgctggagattgacaattcagagctgctgcttctgctggagtcccct
gaatccttgcactccaagattgaggaagcagttgccgttctccaggcacaccaggccact
gaggtgtcacacaagggcagcacagccccgttcccacagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (5)   
   Pfam (5)   
All databases (26)   

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