KEGG   Caldicellulosiruptor acetigenus I77R1B: Calkr_1906
Entry
Calkr_1906        CDS       T01356                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cki  Caldicellulosiruptor acetigenus I77R1B
Pathway
cki03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Calkr_1906
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cki03021]
    Calkr_1906
   03400 DNA repair and recombination proteins [BR:cki03400]
    Calkr_1906
Enzymes [BR:cki01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Calkr_1906
Transcription machinery [BR:cki03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Calkr_1906
DNA repair and recombination proteins [BR:cki03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Calkr_1906
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid 7TMR-HDED
Other DBs
NCBI-ProteinID: ADQ41385
UniProt: E4S4I2
Position
complement(1963584..1967075)
AA seq 1163 aa
MDLFNFDAIKISLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECH
CGKYKKVKYKGVVCDKCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGVPSRMGLILDMT
PRNLEKVLYFAAYVVIDPGDVPNLEKKQILSEKEYRELKEKYGDRFKAGMGAEAIKELLK
EIDLDKLAQELRQELETATGQKKLKIIKRLEVVEAFRKSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLMDLGAPDIIIRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKE
MALELFKPFVMKKLVEKGICNNIKNAKKAVERQRSEVWDILEEVIKDHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPADGKPIVVPTQDMVLGIYYLTLEKKGDKGEGMIFSSEEEALLAYEHKVVGLHARIKVK
RTAQVNGEVISGLVETTVGKIILNQVIPQDLGFVDRSKRENLLKYEIDTLVDKKMLGKII
DRCIKVYGNTRTAEILDEIKELGFKFSTRGAITISVSDMVIPEVKQKLIAEAEQKVENIE
KLYRHGLISDEERYEQVISIWNQTKDKLTEELIQSFDEFNPIFMMANSGARGSKNQISQL
AGMRGLMANPSGKTIEMPIKSNFREGLNVIEFFISTHGARKGLADTALRTADSGYLTRRL
VDVAQDIIVREEDCGTDKGIWVEEIRDGTEVIETLEERIIGRYAASDIVDEKTGEVIVRK
NELITEEVAKKIIDAGINRVYVRSVLECKTRYGVCTKCYGLDLGTGQPVNVGEAVGIIAA
QAIGEPGTQLTMRTFHTGGIAGQDITQGLPRVEELFEARKPKGVAVISEIEGYVSIKEDK
KRTITVRNDNGEERTYEIPYGARLKVNDGDYVQAGDELTEGSINPHDLLRIKGPRGVQSY
LLAEVQKVYKMQGVDINDKHIEIIIRQMMKKVKIEDPGDTELLPGDIVEIHRFEEENDKA
IAEGKRPALGRRVLLGITKAALSTESFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVI
IGKLIPAGTGMAKYRNIVIEENQ
NT seq 3492 nt   +upstreamnt  +downstreamnt
atggacttgttcaatttcgatgctattaaaatcagtcttgcttctcctgaaaagataaga
gaatggtcgcgcggtgaggttaaaaaacccgagaccataaactatagaacactgaagccc
gaaaaagatggacttttctgtgaaaagatttttggtccaacaaaggactgggaatgccac
tgcggaaagtataaaaaggtcaaatataaaggtgttgtttgtgacaagtgcggtgttgaa
gtgacaaaagcaaaggtaagacgtgagagaatggggcacattgaacttgctgcccctgtc
tctcacatctggtatttcaaaggtgtcccaagcaggatgggtttgattttggacatgaca
ccgcgaaatttagaaaaggttttgtactttgctgcatatgtggtaattgacccgggcgat
gtaccaaatttggaaaagaaacagattctctctgaaaaagagtacagggaactaaaagaa
aaatatggcgacaggtttaaggcagggatgggagcagaggcaatcaaagagcttttgaaa
gagattgaccttgacaaactggcgcaagagctcaggcaagaacttgagactgcaacagga
cagaaaaaattaaagataatcaaaagacttgaggttgttgaagcttttagaaagtctggc
aaccgtcctgaatggatgatacttgatgttatacctgtcatcccacctgaacttcgcccc
atggtccagcttgatggcggaaggtttgcaacatctgacctaaatgacctttacagaaga
gtgataaacagaaacaataggctcaaaaaactaatggatttaggtgcaccggatataatt
atcagaaacgaaaagagaatgcttcaggaagctgttgatgctcttatagacaatggaaga
agaggaagaccagtaacaggtcctggtaacagaccgctaaaatcactatctgatatgctc
aaaggaaagcagggaaggttcagacagaatcttttggggaaaagagttgactattcagga
cgttctgttatagttgtagggcctgagcttaagatttaccaatgcggtcttccgaaagag
atggctttggagcttttcaaaccatttgtcatgaaaaaacttgttgaaaaaggaatttgc
aacaacataaaaaatgcaaaaaaagctgttgaaagacagagaagtgaagtgtgggatata
ttagaagaagtaataaaagaccatccagtgctgctaaaccgagcacccactttgcacagg
cttggtattcaggcttttgaaccggtacttgtcgaaggaagggctataagacttcatcca
cttgtttgtacagcgtacaatgctgactttgacggcgaccagatggcagtacacgttcca
ctttctgccgaggctcaggctgaggcaaggtttttgatgttatctgccaacaacctgtta
aagccggcagacggtaaaccaattgtagttccgacccaggatatggttttaggaatttac
tacctcactcttgaaaagaaaggtgacaagggtgaggggatgatattctcatcagaagaa
gaagcacttttggcatatgagcacaaggttgttggtcttcatgcaagaataaaggttaaa
aggacagcacaagtaaatggagaagttatctctggacttgttgagacaacagttggcaaa
atcatattaaatcaggtaataccgcaggaccttggttttgttgatagaagcaagagagaa
aatcttctcaagtatgaaattgatacacttgttgacaaaaagatgcttggaaaaatcatt
gacaggtgtataaaggtttatggaaatacccgaacagcagagatactggacgagataaaa
gaacttggatttaaattttcaacaagaggagcaattaccatctcagtttcggatatggta
attccagaagtcaagcaaaagctcatagcagaggctgaacaaaaggttgagaacattgaa
aaactatacagacatggtttgatttctgacgaagaaagatatgaacaggtaatctctata
tggaaccagacaaaagacaagcttactgaagaacttatccagagctttgatgagttcaat
ccaatattcatgatggcaaactcgggtgcaagaggttccaaaaatcagatatcacagctt
gctggtatgaggggactgatggcaaatccgtctggtaagacaatagagatgccgattaag
tcaaacttcagagaaggactcaatgttatagagtttttcatctcaacacacggtgcacga
aaagggcttgctgacacagcgctgagaactgcagactcaggatatctgacaagaagactt
gtagatgttgcacaggatataattgtaagggaagaggactgtggcacagacaaaggtata
tgggttgaagagataagagatggcacagaggtaattgaaacacttgaagagaggattatt
ggaagatatgcggcttctgatattgttgatgaaaaaacaggtgaggtaatagtaaggaaa
aatgagctcattacagaagaagtagctaagaagataattgatgcaggaatcaacagggta
tatgtaaggtcagttttagagtgcaagacaaggtacggtgtttgtacaaaatgttatgga
cttgaccttggcacaggtcagccggtaaatgttggtgaagcagttggtataatcgcagca
caagctataggcgagccgggtactcagcttacaatgagaacattccacacaggtggtatt
gctgggcaggacattacgcaaggtcttccaagagttgaggagctgttcgaggcaagaaaa
ccaaaaggtgttgctgttatttctgaaatagaagggtatgtttcaataaaagaagacaaa
aagaggacaataacagtcagaaatgacaatggtgaagagagaacgtatgagataccgtat
ggagcaagattgaaggtgaacgatggcgattatgttcaggcaggggatgagcttacagaa
ggttcgataaatccgcacgaccttttgaggataaaaggaccaagaggtgttcagagctat
cttttagcagaggttcagaaagtttacaagatgcagggcgttgacataaacgacaagcac
atagagataataatcagacagatgatgaagaaggtcaagatagaagaccctggtgatacc
gaacttttgcctggcgacattgtagagatacacaggtttgaagaagagaacgacaaggca
atagcagaaggaaaacgtcctgcgcttggcagaagggtgcttcttggtataacaaaagca
gcactgtctactgagtcattcttgtctgctgcgtcattccaggagacaacaagggtattg
acagatgcagcaataaaagggaaggtcgacccgctgattggtcttaaggaaaatgtcatc
attggtaagctaattcctgcaggaactggaatggcaaagtacagaaacattgttattgaa
gaaaatcagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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