KEGG T00564: CKL

Clostridium kluyveri DSM 555: CKL_3827

Entry

CKL_3827 CDS T00564

Gene name

dnaX

Definition

DNA polymerase III subunits gamma and tau (EC:2.7.7.7)

Orthology

K02343

DNA polymerase III subunit gamma/tau [EC:2.7.7.7]

Organism

ckl Clostridium kluyveri DSM 555

Pathway

ckl00230	Purine metabolism
ckl00240	Pyrimidine metabolism
ckl01100	Metabolic pathways
ckl03030	DNA replication
ckl03430	Mismatch repair
ckl03440	Homologous recombination

Module

ckl_M00260

DNA polymerase III complex, bacteria

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:ckl00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:ckl00240]
Genetic Information Processing; Replication and repair; DNA replication [PATH:ckl03030]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:ckl03430]
Genetic Information Processing; Replication and repair; Homologous recombination [PATH:ckl03440]

SSDB

Motif

Pfam:

DNA_pol3_delta2 DNA_pol3_gamma3 AAA AAA_22 RuvB_N AAA_17 DUF815 AAA_5 DUF1884 AAA_14 VirE AAA_24 RNA_helicase AAA_25 AAA_18 AAA_30 AAA_10 Mg_chelatase

Other DBs

NCBI-GI:

153956411

NCBI-GeneID:

5394161

UniProt:

A5N3V9

Position

complement(3877468..3879129)

AA seq 553 aa
MSYTTLYREWRPKNFSDVVGQNHITVTLKNQILNNRVAHAYLFCGTRGTGKTSMAKILAK
AVNCLDIQQGEPCNECEMCKKINQGISMDVIEMDTASKRKLEDIKDVIENVKYPPQEGKY
KVYIMDEVHMLTQEAVNAFLKTLEEPPLNVIFILATTDPQKLPVTILSRCQKFDFRRIKS
SEIFNRLRAIVNEEGIFADDRSLNLISRICDGAMRDALSVLDQAISMGSGKVEYNSIVDM
LGLVTNENLFHLTDSIIEKNVELSMKVIDDIVLSGKDIYNFIKEMIVHLRNLLMVKVSNN
PEEILDISEENIELLKKQAQKIRVEEIMRHINIFQDAEEQSKWVKQSRIYLELAVIKMCK
IEYDTSKEIMLSRLNKLEEAFKQGGMKIFHEKIPSKELGISRDVIKKDNIIGEVNHHDNR
EKNLISKGTQSIIEENMYSKITLDIVKKRWKDILELFKSRHYMVLFAALTTGKIVNCEKG
VITIEYDKNYAFHKQRLEKQENIKIVEQIFSEILKEKVTVRYSIENDIQGNSPSREQLLK
DTFGEDIVEILDE

NT seq 1662 nt +upstreamnt +downstreamnt
atgtcttatactactctatatagagaatggagacctaaaaatttttcagatgtagtaggt
cagaatcatataactgttacattaaaaaatcaaatactgaataatagagtagcccatgct
tatttattttgcggaactagaggtacgggaaaaacttcaatggcaaaaatactagcaaaa
gcggtaaattgtttagatattcagcagggagagccttgtaatgaatgtgaaatgtgcaaa
aagataaatcaaggcatttcaatggatgtaattgaaatggatacagcatctaaaagaaag
cttgaagacataaaagatgtaatagaaaatgtaaaatatccaccacaggaaggtaagtat
aaggtatatataatggacgaagtacatatgcttacccaggaagctgtaaatgcattctta
aaaactttagaagaaccccctttaaatgtaattttcatacttgctactacagatccacaa
aagcttcccgtaaccatactttccaggtgtcaaaaatttgattttagaaggataaaaagt
tcagagatatttaatagacttagagctatagttaatgaagagggaatatttgcagatgat
agaagcttaaatttaatatctaggatatgtgatggtgctatgagagatgcactaagtgta
ttagatcaagccatatctatgggaagtggaaaagttgaatataatagtattgttgatatg
ttggggttagttacaaatgaaaatttatttcaccttacagatagtataatagaaaaaaat
gttgagttatctatgaaggtaattgatgatatagttttaagtggaaaagatatatataat
tttattaaggaaatgatagtacatttgagaaatttgctgatggtaaaggtatccaataat
ccagaagagattttagatatatcagaggaaaatatagaacttttgaaaaagcaggcacag
aaaatacgtgtagaagaaataatgagacatataaatatatttcaggatgccgaggagcaa
tctaaatgggttaagcagagtagaatttatctagagcttgcagtaataaaaatgtgcaag
atagagtacgatacatccaaagagataatgctttctaggttaaataaattggaagaagct
tttaaacaagggggaatgaaaatttttcatgagaaaataccttctaaagaattaggaata
tctagggatgtaattaagaaagataatataattggggaagtcaaccatcatgataataga
gaaaaaaatttgataagtaagggaacacaatctataatagaagagaatatgtattcaaaa
attacattagacatagtaaaaaaaagatggaaagatatacttgaattatttaagagtaga
cattacatggtattatttgcagcacttactacaggtaaaatagtaaattgtgaaaaggga
gtaataactatagagtatgataagaattatgcctttcataaacaaagactagaaaaacaa
gaaaatataaagatagtagaacagatattttcagaaatactaaaagaaaaagttacagtt
agatattctatagaaaatgatatacaaggtaatagtccatcaagagaacaacttttaaaa
gatacttttggagaagatatagtagaaatacttgacgaatag

All links

Pathway (7)   
   KEGG PATHWAY (6)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (18)   
   Pfam (18)   
All databases (43)   

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