KEGG   Citrobacter koseri: CKO_00161
Entry
CKO_00161         CDS       T00592                                 
Name
(GenBank) hypothetical protein
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cko  Citrobacter koseri
Pathway
cko03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cko00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CKO_00161
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cko03019]
    CKO_00161
   03400 DNA repair and recombination proteins [BR:cko03400]
    CKO_00161
Enzymes [BR:cko01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CKO_00161
Messenger RNA biogenesis [BR:cko03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CKO_00161
DNA repair and recombination proteins [BR:cko03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CKO_00161
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII zf-CXXC
Other DBs
NCBI-ProteinID: ABV11330
UniProt: A8ACW7
Position
154154..155983
AA seq 609 aa
MAQAEVLNLELGAKQVLQETFGYQQFRPGQEEIIETVVSGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQHEVMAGCRTGQVRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPSLPFMAL
TATADDTTRLDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLMDARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIRDLAHDKLPVYGIGRDQSHEHWVSVIRQLIHLG
MVTQNIAQHSALQLTEAARPVLRGEVPLQLAVPRIVALKPRVMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSPSEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
NT seq 1830 nt   +upstreamnt  +downstreamnt
gtggcgcaggcggaagtgttgaatctggaattgggggctaaacaggttttacaggaaacc
tttggctaccaacagtttcgcccaggccaggaagagatcattgagacggtcgtctcgggt
cgtgattgcctggttgtcatgccgaccggcggcggcaaatccctgtgttaccagattcca
gccttactgcttaacggactcaccgttgtcgtttcgccgcttatctccctgatgaaagat
caggtcgaccagttgctggcaaacggcgtggcggcggcgtgcctgaactcgacgcagagc
cgtgaacagcagcatgaggtgatggccggttgccgaaccgggcaggttcgcctgctgtat
attgcgccggagcgcctgatgctggataacttccttgagcatctggcgcactggaatccg
gtcttactggccgtcgatgaagcgcactgtatctcgcagtgggggcatgacttccgcccg
gaatacgccgcgctcggtcagctccgccagcgttttccttccctgccgtttatggcgttg
accgccaccgcagatgacaccacccgactggatattgttcgcctgctggggctgaacgat
ccgttaatccagatcagcagctttgaccgtccgaacatccgctacatgctgatggagaaa
tttaagccgctcgatcagctgatgcgctatgtgcaggaacagcgcggcaagtccggtatc
atctactgtaacagtcgggcgaaggtggaggacaccgccgcacgtctgcaaagtcgcggc
atcagcgcggcggcgtatcatgccggtcttgaaaataacgtgcgcgccgatgtgcaggag
aagttccagcgcgacgatctgcaaatcgtcgtggcgaccgtcgcatttggtatgggcatt
aacaaacctaacgtgcgttttgtggtgcatttcgatattccccgtaacattgaatcctac
tatcaggaaaccggccgcgccgggcgtgacggcctgcccgcagaggcgatgctgttctac
gatccggctgatatggcgtggctgcgccgctgtctggaggagaaacccgccgggcagcta
caggatattgaacggcataaactgaacgcgatgggggcgtttgccgaagcgcagacctgt
cgtcgtctggtgctgctgaactactttggcgaagggcggcaggaaccctgcggcaactgc
gatatttgcctcgacccgccaaaacagtacgacggcctgatggatgcgcgtaaagccctg
tcgacgatttatcgcgttaatcagcgttttggtatgggctatgtggtggaagtattgcgc
ggcgcgaacaatcagcgtatccgcgatttagctcatgacaaattgccggtgtacggcatt
ggtcgcgatcagagccatgagcactgggtcagcgtgattcgtcagcttattcatctgggt
atggttacgcagaatattgcccaacattcggcgttgcagttaaccgaagcggcgcgtccg
gtgctgcgtggcgaagtgccgttgcagcttgccgtgccgcgtatcgtcgcgttgaagccg
cgagtgatgcagaaatctttcggcggcaattacgatcgcaaactgttcgccaaactgcgc
aaattgcgtaaggccattgccgatgaagagaatatcccgccgtatgtcgtctttaacgat
gcgacgctgattgaaatggccgaacagatgccggtttcgccgagtgaaatgctgagcgtt
aacggcgtcggcatgcgcaagctggagcgtttcggtaaagagtttatggcgctgatccgc
gcgcatgtcgatggtgacgacgaagagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (28)   

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