KEGG T01708: Clo1100

Clostridium sp. BNL1100: Clo1100_0006

Entry

Clo1100_0006      CDS       T01708

Name

(GenBank) DNA gyrase, B subunit

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

clb Clostridium sp. BNL1100

Brite

KEGG Orthology (KO) [BR:clb00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:clb03032]
    Clo1100_0006
   03400 DNA repair and recombination proteins [BR:clb03400]
    Clo1100_0006
Enzymes [BR:clb01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Clo1100_0006
DNA replication proteins [BR:clb03032]
Prokaryotic type
  DNA Topoisomerases
   Clo1100_0006
DNA repair and recombination proteins [BR:clb03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Clo1100_0006

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3 GyrB_hook

Other DBs

NCBI-ProteinID:

AEY64301

UniProt:

H2JEJ2

Position

4733..6661

AA seq 642 aa
MNDFNNASSYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVANSVDEALAGRC
DTIQVIVHKDNSITVTDNGSGIPVGIHPKMGIPTLEVVHTILHAGGKFGSGAYSVSGGLH
GVGASVVNALSESMEVEVKREGHIYKQKYSRGKPVTSVEIVGETEESGTITTFKPDPEIF
EDIVFDFDAMITRYREMAFLNRGIKIKLIDERPDEIIEKNLHYEGGIISFVEYLNKTKEP
LHDKVIYFEGTRDANIVEVAMQYNDNYNETVFSYANNIATTEGGTHLTGFRTAITKVLND
YARKFNIIKENDKNLSGEDVREGLTAVISVKLPEPQFEGQTKTKLGNSEIRTLVENVVSD
KLNIFLEENPSIAKIILDKSLTAARAREAARKARELTRRKSAMDSSTLPGKLADCSEKDP
TKTEIFIVEGDSAGGSAKQGRDRRIQAILPLWGKMLNVEKSRLDKVFDNEKLAPVIIALG
AGIGDDFDTSKLRYDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQGHVYIAMPPLFK
VYKGKEEFYAYDDRQVTKIYEERGWRKDDPNVNIQRFKGLGEMNPDQLWETTMDPETRTI
IKVDVQDAITADEVFSMFMGEKVEPRKEYIHMHAKDVTYLDI

NT seq 1929 nt +upstreamnt +downstreamnt
atgaatgattttaacaatgcttcatcttatgatgagagtcagattcaggtgctggaaggc
ttggaggctgtacgtaagagacctggaatgtatataggaagtacctcaagcagaggattg
catcatttagtttatgaaatagttgcgaatagtgttgatgaagcacttgccggaagatgt
gatacaattcaagtaattgttcacaaggataattctattactgtaactgacaatggaagt
ggtattcctgttggtatacatcctaaaatgggtattccaactcttgaagtagtacataca
atacttcatgccgggggaaagttcggaagtggtgcatatagtgtttcaggcggacttcat
ggtgttggagcctctgttgttaatgcattatctgaaagtatggaggttgaagtaaaaagg
gaagggcatatttacaaacagaaatattctcgaggaaaacctgttacttctgttgaaata
gtgggcgaaactgaagaaagcggaacaattactacctttaagccggacccggaaattttt
gaagatattgtttttgactttgatgcaatgataaccagatatagagaaatggcattttta
aatagaggcataaagattaagcttattgacgagcgtcctgatgagataattgaaaaaaat
ctgcattacgaaggtggaattatctcttttgttgagtatcttaataaaacaaaagaacct
ttacatgataaagtaatttattttgaaggcaccagagatgcaaatatagttgaagttgca
atgcaatataatgacaattacaatgagaccgtttttagttatgctaataacattgcaaca
acagaaggcggaacacatttaaccggatttagaactgctattactaaggttttaaatgat
tatgccagaaaattcaatattattaaagaaaacgacaagaacttatcaggagaagacgta
cgagaaggtcttacagcggtaataagtgtaaaacttcccgagccccagtttgaaggacaa
acaaaaacaaagcttggtaatagtgaaataaggacacttgttgaaaacgttgtaagtgat
aaattgaacatatttttagaagaaaatccttcaattgcaaaaattattcttgataaaagc
cttactgcggccagagcaagagaagcagccagaaaagcgagggaattaaccaggagaaag
agtgctatggattccagtacccttccaggtaaactagctgactgttccgaaaaggaccca
acaaagacagaaatatttattgttgagggtgattctgcaggtggttctgcaaaacaggga
agagatagaagaatacaggctatacttcctctgtggggtaaaatgcttaatgttgaaaag
tcaagactggataaggtgtttgataatgaaaaattggctcctgttattattgctcttgga
gcaggtataggagatgactttgatacatcaaaattaaggtatgacaagattataattatg
gctgatgcagatgttgatggttctcatatcagaatgttacttttaacatttttcttcaga
tatatgagaccgctagttgaacagggtcatgtctacattgcaatgcctcctttgttcaag
gtttataagggaaaagaagaattttatgcgtatgatgacagacaggtaactaagatttac
gaagagcgtggatggagaaaagatgaccccaatgttaacatacaaagattcaaaggtctt
ggagaaatgaatcctgatcaattgtgggagactacaatggatcctgaaacacgtaccatt
ataaaggttgatgttcaggatgcaattacagctgatgaagtgttcagtatgtttatggga
gagaaggttgaaccgagaaaagaatatatccatatgcatgcaaaggatgtaacatattta
gatatttaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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