KEGG T00766: Clim

Chlorobium limicola: Clim_0947

Entry

Clim_0947 CDS T00766

Definition

recombinase D (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

cli Chlorobium limicola

Pathway

cli03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:cli03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 UvrD_C_2 AAA_19 AAA_11 Viral_helicase1 Helicase_RecD HHH_5 DUF258 PIF1 PhoH AAA_29 NTPase_1 T2SE HHH_2 AAA_16 UvrD-helicase AAA_28 DEAD cobW TrwB_AAD_bind AAA_22 ABC_tran MMR_HSR1 ArgK ABC_ATPase AAA_10 NACHT AAA_5 AAA_18 AAA_14 SRP54 DUF2075 AAA_25 AAA IstB_IS21 AAA_23 AAA_17 Arch_ATPase

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1035843..1038065)

AA seq 740 aa
MATPSSDTENNAERELRQETVTGTVERVTYHNEENGFSVLKIRARGSRDAVTVVGNSPAI
SPGEFITCTGSWQNNRTHGLQFKADGIDIIQPTTADGIEKYLASGMVKGVGSFYAKKLVK
KFGTGVLDILDSNPERLLEIEGIGRKRLELITKSWEEQKAIREIMVFLQSHGVGIARAFR
IYKTYRQDAIKKVSENPYSLSLDIDGIGFLTADTIASKLGIAHDSLIRAEAGVRHVLQEL
ASSGHCAVPKERLVQESAAMLDISAPIVEEAIAVETGKFNLVRETIDGAEIFYLAPLHRA
EEKTAAALAALLRGRTPWKGIDLQKAVVQIAEETGLQLSPSQKEALALVLTNKATVITGG
PGVGKTTLVNAILRVIRKKTTKILLCAPTGRAAKRLSESTGMEAKTIHRLLEFDPNSGGF
KRSSGNPLEADMVVVDETSMVDIVLMSKLLSAVPAKAALLLVGDADQLPSVGPGAVLTDI
IASDAVPVVRLTEIFRQAARSQIIVNAHRINNGEIPRNAEGEELSDFYVVNSQTPENIHA
KLMQMVTERIPARFGFHPVRDIQVLTPMNRGGLGSRALNAELQKALNGSAEPKVSRFGSI
FSPGDKVIQMVNNYDKEVFNGDIGAITAIDTEESELTVDFDKRPVRYEFSELDELALAYA
TSIHKSQGSEYLAVVIPLAMQHFTLLERNLIYTAVTRGKKLVVIIAQPKALALAVTNRKA
DRRMTTLALKLTEAAGNPNP

NT seq 2223 nt +upstreamnt +downstreamnt
atggcgacaccatcttcagataccgaaaacaacgctgaacgcgaactccggcaggaaacg
gttaccggcaccgttgaacgggtaacctaccataacgaggagaacggattttccgtgctt
aaaatcagggcgagaggcagtcgggatgccgtgacggttgtgggcaacagtccggcaata
tctcccggagagtttataacctgcacgggaagctggcagaacaaccgcacccacggcctg
cagttcaaggccgacgggatcgacatcattcagccgacaacggccgacggcatcgaaaaa
taccttgcatccggcatggtcaagggcgtcgggtcgttctacgcaaaaaaactggtcaag
aaattcggaaccggcgtactcgacatactcgacagcaatcccgaacggctgcttgaaata
gagggcatcgggagaaaaaggctggagctgatcacgaaatcctgggaggagcagaaagcc
atccgggaaatcatggtttttctgcagtcgcacggagtcggtatcgcccgggcgttcagg
atctataaaacctatcgccaggatgccatcaaaaaggtttccgaaaacccctacagcctc
tccctcgatattgacggcatcggctttctcaccgccgacaccatcgcctcgaagctcggc
atagctcacgactcgctcatcagggccgaagccggagtgcgccatgttctgcaggaactg
gcctccagcggccactgcgccgtgcccaaagagcggctggtgcaggaatcggccgccatg
ctcgacatctccgctccgatcgtggaagaagccattgccgtggaaaccggcaagttcaat
ctggtgcgcgaaaccattgacggagcagagatcttttatctcgcgccgctccaccgcgcc
gaagaaaagaccgccgcggcgctcgccgctctcctgcgggggaggacgccatggaaaggg
atcgatctgcaaaaagccgtggtgcagattgccgaagagaccggcctgcaactctcccct
tcccagaaagaggcacttgcgcttgtcctcacgaacaaagccaccgtcattaccggaggc
cccggtgtcggcaaaacgacgctcgtgaacgccattctcagggtcatccgaaaaaaaacc
accaaaatcctgctctgcgcccctaccggccgggcggcaaaacggctctcggaatcgacc
ggtatggaagcgaagaccattcaccgcctgcttgaattcgatcccaacagcggcggcttc
aaacgcagctccggaaacccgctcgaagcggatatggtggtcgtcgacgaaacctcgatg
gtcgatatcgtgctgatgagcaagctcctctctgcggttccggcaaaagccgccctgctg
cttgtgggtgatgccgaccagctcccttccgtgggccctggtgcggtacttaccgacatc
atcgcatccgatgcggttcctgtagtacggctgaccgaaattttccggcaggcggcccgg
tcgcagatcatcgtcaacgcccaccgcatcaacaacggcgaaatcccgcgcaacgccgaa
ggcgaagaactgtcggatttctatgtggtgaactcgcagacacccgaaaatatccatgcc
aagctcatgcagatggtaaccgaacgcatcccggcccgcttcggttttcatccggtgcgc
gacattcaggtgctcaccccgatgaaccggggcgggctcggttcgcgtgccctgaacgcc
gaactgcagaaagcgctcaacggcagcgccgagccgaaagtatcgcgcttcggctccatc
ttttcgccgggcgacaaggttatccagatggtcaacaactacgacaaggaggtcttcaac
ggcgacatcggcgccataacggcaatcgacaccgaagagagcgagctgacggtcgatttc
gacaaacggcccgtacgctacgagttcagcgaactcgatgaactcgcgctggcctacgcc
acaagcattcacaaaagccagggctccgaatatctcgccgtcgtcattccgctcgccatg
cagcactttacgctgctcgagcggaacctgatttacaccgccgtcacgcggggaaaaaag
cttgtggtcatcattgcgcagccaaaggccctcgctcttgcagtaacaaacagaaaagcc
gaccgccgcatgaccacgctcgcccttaaactgacggaagccgcaggaaacccgaacccc
tga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-CLI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (39)   
   Pfam (39)   
All databases (49)   

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