KEGG   Clostridium ljungdahlii: CLJU_c21210
Entry
CLJU_c21210       CDS       T01276                                 
Symbol
hfq
Name
(GenBank) predicted RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
clj  Clostridium ljungdahlii
Pathway
clj02024  Quorum sensing
clj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:clj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLJU_c21210 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CLJU_c21210 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clj03019]
    CLJU_c21210 (hfq)
   03036 Chromosome and associated proteins [BR:clj03036]
    CLJU_c21210 (hfq)
Messenger RNA biogenesis [BR:clj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CLJU_c21210 (hfq)
Chromosome and associated proteins [BR:clj03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CLJU_c21210 (hfq)
SSDB
Motif
Pfam: Hfq LSM DUF4978
Other DBs
NCBI-ProteinID: ADK15181
UniProt: D8GJM0
Position
complement(2308555..2308797)
AA seq 80 aa
MSKTANNLQDIFLNGARKNKIPVTIYLTNGFQIKGNVKGFDNFTVIMDCDGKQMMVYKHA
ISTMTPIKCILFNNFSGNEL
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtaaaacagctaataacttacaggacatatttttaaatggggcaaggaaaaataaa
attccagttactatatacttaacaaatggatttcaaattaaaggaaatgtaaagggtttt
gacaactttactgttataatggattgtgatggtaaacaaatgatggtatataaacatgcg
atttcaactatgacacctataaaatgcattttatttaacaacttttcaggaaatgagcta
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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