KEGG   Clostridium ljungdahlii: CLJU_c35420
Entry
CLJU_c35420       CDS       T01276                                 
Name
(GenBank) predicted RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
clj  Clostridium ljungdahlii
Pathway
clj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:clj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLJU_c35420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clj03019]
    CLJU_c35420
   03009 Ribosome biogenesis [BR:clj03009]
    CLJU_c35420
Messenger RNA biogenesis [BR:clj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CLJU_c35420
Ribosome biogenesis [BR:clj03009]
 Prokaryotic type
  rRNA helicases
   CLJU_c35420
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 NDK
Other DBs
NCBI-ProteinID: ADK16583
UniProt: D8GSK1
Position
3863573..3865150
AA seq 525 aa
MENINFSDLNLDPKVLQAIDDMGFEEPSQIQAESIPVILDGNDVIGQAQTGTGKTLAFGA
PMLSKITTKSKHISALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLK
RGMDVVVGTPGRILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENIIKATNSDRQT
LLFSATMPDQIKKLSSRYMKSNIKSIKIAKNTLTVDKTKQYYYEIKQKDRFESLCRILDV
DEPSSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLVAT
DVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQIEK
FTKSKIRRKEIPTVDDIYEAKYKNIEEQVKSIISEDNYKNFIPIATELDEEYNLVDVAAA
LMKIIFDKELSFDYKENSLTVDEKDVRLFLSIGRMDNLTPRKLLKFISETSSVEAYEIGD
IDILNKFTFINVPERVSSIILKKTNGKKLQGRRVSVEVAKSKKSH
NT seq 1578 nt   +upstreamnt  +downstreamnt
atggaaaatattaattttagtgatttaaatttagatcctaaggttcttcaagcaattgat
gatatgggatttgaagaaccatctcaaattcaagctgaatcaatccctgtaatactagat
gggaacgacgtaattggtcaggcacagacaggtacaggaaagaccttagcttttggagca
cctatgttaagcaagataactaccaaaagcaaacacatctcagctcttatagttactccc
acccgagaacttgcaattcaagtaaatgatgagttgtccagaattgctaaattcaaaaaa
gtagccctattacctatatacggtggtcaacctatagacaggcagattagatctttaaaa
agaggtatggatgtagtagtaggcacccctggaagaatacttgatcatataaagagaaaa
actttagatcttagcaatatagaatttttaatattagatgaagcagatgaaatgttggat
atgggttttatagaagatatagaaaacataataaaagctacaaattctgacagacagaca
ttacttttctctgctactatgccagatcagataaagaaattgtcttccaggtatatgaag
tcaaatattaagagtataaaaatagctaagaacacattgactgtagataaaacaaaacaa
tattactatgagataaaacaaaaagatagatttgaatctttatgtagaattctagacgta
gatgagccttcaagtgccataatattttgcaaaaccaaacgtggtgtagatgaattagta
gaaggtttgcaggctagaggatacaatgtagaaggtatgcacggtgacatgggacagaac
cagagattaaatacccttagaaagtttaaagaaggttcccttgaattcttagttgccaca
gacgtagctgcaagaggtatagatgtggaaaatgtttcccacgttataaattatgacctt
ccacaggatacagaatcttatgttcatagaattggaagaaccggaagggcaaacaaagaa
ggtattgcctattctttagtaacacctagagaatacatacttttaaagcaaatagagaag
ttcaccaaaagtaagataagaaggaaggaaattcctacagtagatgatatctatgaagct
aagtataaaaatatagaggaacaagttaaaagcattatatctgaagacaattataaaaac
tttattcctatagcaactgaattagatgaagaatacaatctagtagacgtagcagctgct
cttatgaaaataatttttgacaaagaattgagctttgattataaggaaaattccttaact
gtagatgaaaaagatgttaggttattcctctcaataggtagaatggataatttaactcct
agaaaacttttaaaatttataagtgaaacatcttcagtcgaagcctatgaaataggtgat
atagatatactaaataaatttacatttataaatgtcccagaaagagtatcttctattata
ttgaaaaaaactaatggtaaaaaacttcagggaagaagagtttccgttgaagtggctaaa
agcaaaaaatctcattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system