KEGG   Campylobacter lari subsp. concheus LMG 11760: CONCH_0453
Entry
CONCH_0453        CDS       T03557                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cll  Campylobacter lari subsp. concheus LMG 11760
Pathway
cll03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cll00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CONCH_0453 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cll03021]
    CONCH_0453 (rpoC)
   03400 DNA repair and recombination proteins [BR:cll03400]
    CONCH_0453 (rpoC)
Enzymes [BR:cll01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CONCH_0453 (rpoC)
Transcription machinery [BR:cll03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CONCH_0453 (rpoC)
DNA repair and recombination proteins [BR:cll03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CONCH_0453 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AJC88890
Position
417211..421764
AA seq 1517 aa
MSKFKPIEIKEDGRPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRFKGIKCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAYYDNENTKKVEFCDVLNEEQYLNLMQR
YESSGFKARMGGEVVRDLLANLDLVGLLNKLKEDIAATNSEAKKKTIIKRLKVVENFLNS
NLNTNTNSDEVVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKRLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGRSVTVPSQDMVLGIYYLSLEKD
GAKGEHKICTGIEEVMIALEAKSLDIHASIRSVVDGRKITTTAGRLIIKSILPDFVPENM
WNKVMKKKDIAALVDYVYKEGGLEVSASFLDKLKDLGFEYATKAGISISIADIIVPDQKQ
KSIEEAKRQVREIQNSYNLGLITSGERYNKIIDIWKSTNNVLSKDMMELIKKDKEGFNSI
YMMADSGARGSAAQISQLAAMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKVTMEDCGAHEGVEINEITADGVVIETLEERILGR
VLAENIIDSITNEILFSEGTLVDEEKARIIVESGVKSVSIRTPITCKAKKGVCSKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVVAHKEGFVRFYN
LNTYQDRQGKTIVANHRNAAILLVEPKIKAPFKGTIHIEHAYEDVVVSVKAKNNEAKFIL
RKYDLAKANELAGVSGNIEGKLYIPYSDGAEVAENESIVEVIKEGWNIPNRIPYASELLV
KDGDPITQDIIAGAKGTLKFYMLKGDGLDRIRDLKKGDVVKEKGVFVVIADENDREAKRH
YIPRDSVIEFDDSAFVDNPKTIIAKSSKEDKTIIAEWDAYNNTVIAEVAGTINFEDIESG
YSADEQIDEATGKRSLVINEYLPSGVRPALLIIGENDKVVRYQLEPKTVIYVNDGDKVKQ
ADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNTAVVAEIDGVVRFDKPLRSKERIII
QAEDGSSAEYLIDKSKRIQVRDGEFIHAGEKLTDGVISSHDVLRILGEKALHYYLISEIQ
QVYRGQGVVISDKHIEIIVSQMLRQVKIVDSGHTNFIVGDLVSRRKFREENERILRYGGE
PAVAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIP
VGTGLYGDQNLKLKQQN
NT seq 4554 nt   +upstreamnt  +downstreamnt
atgagtaaatttaaacctatcgaaataaaagaagatggtagacctagagactttgaagct
tttcaattaagacttgcaagtcctgaaaaaatcaaatcatggtcttatggtgaagtaaaa
aaaccagaaacaattaattatagaaccttaaagcctgaaagagacggtcttttttgtgct
aaaatttttggaccggtaagagattatgagtgtctttgtggtaagtataaaaaaatgcgt
tttaaaggtattaagtgcgaaaaatgtggtgttgaagttactagttctaaagtacgccgt
tcaagaatggggcatattgaattagttacaccggtagctcatatttggtatgtaaattct
ttgccaagtcgtattggtactttacttggcgtaaagatgaaagacttagagcgcgtattg
tattatgaagcatatatagtagaaaatccaggtgatgcatactatgataatgaaaatact
aaaaaagttgaattttgtgatgtattaaatgaagagcaatatttaaatttaatgcagcgc
tacgaaagcagtggttttaaagctagaatgggtggcgaagttgttagagatttgctagca
aatttggatcttgttgggcttttaaataaattaaaagaagatattgcagcaactaattca
gaagcaaagaaaaaaactattattaaacgcttaaaagtggtagaaaatttcttaaatagt
aatctaaatactaatacaaatagcgatgaagtagttccaaatcgtcctgagtggatgatg
attacaaatttacctgtattaccacctgatttaagacctttggtagctttagatggtgga
aaatttgcagtttctgatgtgaacgatttatatagaagggttattaatagaaatacacgc
ttgaaaagacttatggagcttgatgcacctgaaattatcattagaaatgaaaaaagaatg
ctacaagaagcagttgatgctttatttgataatggtagaagagcaaatgcagttaaaggc
gcaaataaacgtccattaaaatctttaagtgaaatcatcaaaggaaaacaaggtcgtttc
agacaaaatctacttggtaaaagagtggatttttcaggtcgtagtgttattgttgttgga
ccaaaactcagaatggatcaatgtggcttgcctaaaaaaatggctttagaattatttaaa
ccacatttgttagctaagcttgaagaaaaaggttatgcaactactgtaaaacaagctaaa
aaaatgattgaaaataaaaccaatgaagtttgggagtgcttagaagaggttgttaaaggt
catcctgtaatgctcaaccgtgcaccaaccttacataagctttctatccaagctttccat
cccgtacttgtagaaggcaaagcaattcaacttcatccattggtgtgtgcagcatttaat
gctgactttgatggggatcaaatggctgtgcatgtgcctttatctcaagaagcaatagct
gagtgtaaagtattaatgctttcatctatgaatatcttgcttccagcaagcggtcgttct
gtgactgtaccttctcaagatatggttttgggaatttattatctatctttagaaaaagat
ggtgctaagggtgagcataaaatttgtacaggtattgaagaggttatgattgctctagaa
gcaaaatctttagatattcatgcaagtattagaagcgtagttgatggaagaaaaatcaca
acaactgcaggaagattaatcattaaatctatcttgcctgattttgttccagagaatatg
tggaataaagtcatgaagaaaaaagatattgcagctttggttgattatgtttataaagaa
ggtggacttgaagtaagtgctagttttttagataaactaaaagatcttggttttgaatat
gcaacaaaagcaggtatttctatttcaattgctgatattattgtacctgatcaaaagcaa
aaaagtatagaagaagctaaaagacaagtaagagaaatccaaaattcatataatttaggt
ttgattacttcaggtgaaagatataataagattattgatatttggaaaagcactaataat
gtcttatcaaaagatatgatggagttgattaaaaaagacaaagaaggatttaactctatt
tatatgatggcagattctggtgctaggggttcagcggctcaaatttcacagcttgctgcg
atgaggggtcttatggctaaacctgatggttctattattgaaacaccgattatttcgaac
ttccgtgaaggactaaatgttcttgaatatttcatttcaactcacggtgctagaaaaggt
cttgcagatacagcgttaaaaacagcaaatgcaggttatttgacaagaaaacttatcgat
gtggcgcaaaatgtaaaagttacaatggaagattgtggcgcacatgagggtgttgagatt
aatgaaattaccgcagatggtgttgtgattgaaaccttagaagaaagaattttaggaaga
gttttagctgaaaatattattgattctattactaatgagattttgttctcagaaggtact
ttagtagatgaggaaaaagctaggattattgttgaaagtggagtaaagagtgtaagcatt
agaactcctattacttgtaaagctaaaaaaggagtttgttctaaatgctatggtattaat
ctaggtgaaggaaaattagttaaaccaggtgaggctgtaggtattatatctgctcaatca
attggtgagccaggaacacagcttacgctaagaactttccatagtggtggtactgctagc
acagatttgcaagatcgtcaagtggtagcacacaaagaaggatttgtaagattttataat
cttaatacctatcaagatagacaaggtaaaactatagtggctaatcatcgcaatgctgct
attttacttgttgagccaaaaatcaaagctccatttaagggaactatccatattgagcat
gcatatgaggatgtggtggttagcgttaaagcaaaaaacaatgaagctaaatttatatta
agaaaatatgacttagcgaaagctaatgagcttgcgggtgtaagtggtaatattgaaggt
aaattatatatcccatatagcgatggtgctgaagtagctgaaaatgaaagtattgtagaa
gtaatcaaagagggttggaatataccaaaccgtatcccttatgcgagtgaattgctagta
aaagatggtgatcctattactcaagatattatagctggtgcaaaaggtactttgaagttt
tatatgcttaaaggggatggcttagatagaattagagatcttaaaaaaggtgatgtggtt
aaagaaaaaggtgtttttgttgttattgctgatgaaaatgatagagaagcaaaaagacac
tatataccaagagattctgtgattgaatttgatgatagtgcttttgtggataatcctaaa
actatcatagcaaaatcaagtaaagaagataaaactatcattgctgaatgggatgcatat
aataatactgtaattgcagaagttgcaggtacaattaactttgaagatattgagtcaggc
tatagtgctgatgagcaaattgatgaagcaaccggtaaaagatctcttgttattaatgag
tatttaccaagtggagtacgtccagcattattaatcataggtgaaaatgataaagtagtg
cgttatcaactcgaaccaaaaactgttatttatgtaaatgatggtgataaggttaagcaa
gctgatatcctagctaaaacaccaaaagcagctgccaaatcaaaagatattactggaggt
cttccaagggtatctgaattgtttgaagcaagaaagccaaaaaatactgctgttgtggct
gaaattgacggagttgttagatttgataaacctttaagatcaaaagaaagaattattatc
caagcagaagatggaagcagtgcagagtatttaattgataaatcaaaacgcattcaagta
agagatggtgaatttatccatgcgggtgaaaaattaaccgatggagttatttcaagtcat
gatgtgcttagaattttaggtgaaaaagcattgcattattatcttatttctgaaattcag
caagtttatcgtggtcaaggtgttgtgatttctgataagcatattgaaatcattgtatcg
caaatgctaagacaagtaaaaattgttgatagtggtcatacaaactttattgtgggtgat
ttggtttcaagaagaaaattcagagaagaaaatgaaagaattttaagatatggcggtgaa
cctgctgtggctgagcctgtattgcttggggttacaagagcagctattggaagtgatagc
gtgatttcagctgcttcattccaagaaacaacaaaagttttaacagaagcaagtattgca
ggtaaatttgactatctcgaagatctaaaagaaaatgtgatcttaggtcgtatgattcct
gttggtacaggtctttatggagatcaaaatttaaaacttaagcaacaaaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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