KEGG   Mageeibacillus indolicus: HMPREF0868_0666
Entry
HMPREF0868_0666   CDS       T01181                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
clo  Mageeibacillus indolicus
Pathway
clo03030  DNA replication
clo03410  Base excision repair
clo03420  Nucleotide excision repair
clo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:clo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HMPREF0868_0666 (ligA)
   03410 Base excision repair
    HMPREF0868_0666 (ligA)
   03420 Nucleotide excision repair
    HMPREF0868_0666 (ligA)
   03430 Mismatch repair
    HMPREF0868_0666 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:clo03032]
    HMPREF0868_0666 (ligA)
   03400 DNA repair and recombination proteins [BR:clo03400]
    HMPREF0868_0666 (ligA)
Enzymes [BR:clo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HMPREF0868_0666 (ligA)
DNA replication proteins [BR:clo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HMPREF0868_0666 (ligA)
DNA repair and recombination proteins [BR:clo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HMPREF0868_0666 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HMPREF0868_0666 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     HMPREF0868_0666 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HMPREF0868_0666 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 RNA_ligase PT-HINT ADK_lid RUBY_RBDX
Other DBs
NCBI-ProteinID: ADC91422
UniProt: D3R1D1
Position
complement(1122780..1125056)
AA seq 758 aa
MMKPRQVQLDLWADVDAIGYDHAADEDTGNLANDSTIAVKPELQAQAPGAAVEGADTDID
RPDLAATVEPEKKLKEAVAAALAKLDKTASPELREITELRAELNFHNNLYYVEDSPIISD
YSYDAMLRRLEELETAHPEYMTTDSPTVKVGGRASEKFRKLTHIVPMQSLRDVFSREELQ
EAVERMQEQLPVGAELVVEEKIDGLSVSLEYENGVFVRGSTRGDGLVGEEITENLKQIKS
LPLKLQKPLPYLEVRAEIYLNKENFAALNKAQLAAGLKPFANPRNAAAGSLRQLDPRITR
DRNLSFFAFNIQRVEGITFTTHDESLFYICNEGFPVVYSSFAHSDFAKIWECVEKIATRR
ASLPYMIDGAVIKINNLQYREKLGVTAKTPRWAVAYKYPPEEQETVVKDIKLQVGRTGKI
TPLAVLEPVMVDGSCVSSATLHNADYIKAKDIRVGDTVLIAKAGDVIPAIQKVVLDRRPL
KAKPFVMPDKCPVCGEKLIRRKENEVDLRCGNLSCPAQVFRRLLHMVAKDALDIADLGPA
VLARLQEAGLINELSDIFRLAAYRPEMLNLPGFQQKSVDNLLNEIEKAKVKPLDRFIVAL
GIDYVGVVAAKKLAVAFRKGGLSALAAADIETLLSVETIGQTAAQSIIDFFKRPTTVALL
QAWQELGVKPASPPLIEENGVWQGKIFAVTGTLENYKRSEVKQLIEARGGTVANTVSSKI
FAVIAGEKAGGKLAKAKELGIPVWSETDFAAKLSSMAK
NT seq 2277 nt   +upstreamnt  +downstreamnt
atgatgaaaccgcggcaagttcaacttgatttgtgggcggatgtggacgcaatcggttac
gatcatgcagctgatgaagacacggggaatttggcgaatgattcgactattgccgtaaag
ccggagctgcaagcacaagcacccggtgcagcagtagagggtgccgataccgacatcgac
cgacccgacttagccgcgaccgtggaaccggaaaaaaagcttaaagaggctgttgcggct
gccttggccaaacttgacaagacagcatcacctgaactaagagaaataaccgagttgcga
gctgagctcaatttccataacaatttatattatgtggaagacagcccaatcatctctgat
tatagctatgatgccatgttgcgccgccttgaagaactggaaacagctcatccggaatat
atgactactgattcgccgaccgtcaaagtcggtggccgagcatcagaaaaattccgcaaa
cttactcacattgttccaatgcagagtttacgcgacgttttcagccgggaagagttgcaa
gaagccgttgagcgtatgcaagaacagttgccggtgggggcagaactggtggtcgaagaa
aaaattgacggcctgtccgtgtcgctcgaatatgagaatggtgtgtttgtacgcggctct
acccgaggtgacggtctagtcggcgaagagataacggaaaacctgaaacagatcaaaagc
ctgccgctgaagttacaaaaacctttgccgtatttagaagtgcgggcggagatatattta
aacaaagaaaattttgcagctttgaataaagctcagttggcggcagggctgaagccgttt
gccaatcctcgcaacgcggcggccggatctttgcgccaattggacccgcgcataacccga
gatcgcaacctgtcatttttcgcgttcaacattcagcgggttgaaggcattacatttacc
acccatgacgaaagcttattttatatttgtaatgaaggattcccagtggtgtattcatca
tttgcgcacagcgatttcgccaaaatttgggaatgtgtagaaaagattgccacgcggcgt
gccagcttgccttacatgatcgacggagcggtaatcaagataaacaatttacaatatcgt
gaaaaactgggcgttacggccaaaacaccgcgctgggcggtagcttacaaatatcccccg
gaagaacaagaaaccgtggtaaaagatattaagctgcaagttggtagaaccggcaaaatc
acgccattagcggtcttggagccggtcatggttgacggaagctgtgtcagcagcgcgacc
ctacacaatgccgattacatcaaagccaaggacatacgcgtcggtgatacggtgcttatt
gccaaagctggcgacgttattccggcgatacaaaaagttgttttggatcggcgtccgctg
aaggccaaaccctttgttatgcctgacaaatgccccgtgtgcggtgaaaaattgattcgc
cgcaaagaaaatgaggttgacttgcgctgtggcaatttgagctgtccggctcaggttttc
cgccgcttgctgcacatggtggctaaggatgccttggacattgccgatttgggaccggcg
gtgctggcacgtttacaggaagctggccttatcaatgaactcagtgatattttccgcttg
gccgcttaccgcccggagatgctcaatttgcccggttttcagcaaaagtccgtagataac
ttattgaacgaaattgaaaaagctaaagtgaagccgctggatcgtttcatagttgctttg
ggaatcgattatgtcggcgtagtggcggcaaaaaaactggcggtagcgttcagaaaaggt
gggttatcagccttggctgctgccgatatagaaactttgcttagtgtcgaaactataggc
caaactgcggcacagagtatcattgatttctttaaacgtccgaccactgtggcacttttg
caagcttggcaagagcttggggttaagccggcgtcaccgccactgatcgaggaaaacggg
gtatggcagggcaaaatttttgctgtaactgggacgttggaaaattataagcgcagtgaa
gtcaaacaacttatcgaagcacgtggcggtacagttgctaacaccgtttcgagcaaaatt
ttcgcggtgattgccggcgaaaaagcgggtgggaaactcgccaaggccaaagaactaggg
atcccggtttggtcggaaacggactttgccgccaagctgagttcgatggcaaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (45)   

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