KEGG   Campylobacter lari RM16701: UPTC16701_0021
Entry
UPTC16701_0021    CDS       T03550                                 
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
clr  Campylobacter lari RM16701
Pathway
clr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:clr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UPTC16701_0021
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clr03019]
    UPTC16701_0021
Messenger RNA biogenesis [BR:clr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     UPTC16701_0021
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Lactamase_B_6
Other DBs
NCBI-ProteinID: AJD04096
Position
complement(18455..20413)
AA seq 652 aa
MSEENKTQEQNKTKRFNKFRNKRKKDSQNQEQNSEIKNETKVENTQTEASEEKKKKKKNR
NLPSKLSGNEEWQIELAKSIEANKIMHELRLHPLKHNNSSEHKIRITPLGGLGEIGGNIT
VFETNNDAIIVDIGMSFPDGTMHGVDIIIPDFDYVRKIKNKIRAIIITHAHEDHIGAVPY
FFKEFQFPIYATPLALGMISNKFEEHGLKAERKWFRPITKRKIYEIGEFNLEWIHITHSI
IDACALAIKTKAGTIIHTGDFKIDQTPIDGYPTDLSRLAQYGEEGVLCLLSDSTNSYKEG
YTKSESSVGPTFDQIFAKTKGRVIMSTFSSNIHRVYQAISYGLKYGRKVCVIGRSMERNL
YTTMELGYIKLDRKIFIDADEVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKP
SDQVIISAKAIPGNEANVSAVLDFLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLVKP
KFFLPVHGEYNHINKHKETALKCGIPERNIYLMSDGDQVELCQKYIKRVKTVKTGKVFVD
NQINKQIADDVVIDRQKLADSGIVVIIAQLDKASKTLINKPRVFSYGLVADKQDGAFSKE
MSDVLSQFFPNVKDEILDNPKVLEAQIRQVLRKHIFRKIKKYPTIVPTIFVM
NT seq 1959 nt   +upstreamnt  +downstreamnt
atgagcgaagaaaacaaaactcaagagcaaaataaaactaaaagatttaataaatttaga
aacaaaagaaaaaaagattcacaaaatcaagagcaaaatagtgaaattaaaaacgaaaca
aaagtagaaaatactcaaactgaagctagcgaagaaaaaaagaaaaagaaaaaaaataga
aatttaccttctaaattaagcggtaatgaagaatggcaaatagaacttgctaaaagcata
gaagctaataaaatcatgcacgagctaagacttcaccctttaaaacacaacaactcaagc
gaacataaaattcgtattacgcctttgggtgggcttggggaaatcggtggaaatatcact
gtttttgaaaccaacaacgatgcaattatcgttgatataggtatgagttttccagatgga
accatgcatggagtagatattatcatacctgattttgactatgtaagaaagattaaaaac
aaaattcgcgctatcatcatcactcatgctcatgaagatcatatcggtgctgtgccatat
tttttcaaagaatttcaatttcctatctacgcaacacctttagcattaggtatgatttca
aataaatttgaagaacatggtttaaaagctgagcgtaaatggtttagacctataacaaaa
agaaaaatttatgaaataggcgagtttaacttagaatggattcatataacccactctatc
atcgatgcttgtgctttagctattaaaactaaagcaggaaccatcatacacactggtgat
tttaaaatagatcaaacaccaattgatggttatccaacggatttaagtcgtttagctcaa
tatggcgaagaaggcgtgctttgtcttttaagtgatagcacaaactcatataaagaaggt
tacacaaaaagtgaaagctccgtaggtcctacttttgatcaaatttttgccaaaactaaa
ggcagagtaatcatgagcacctttagttctaatatccaccgtgtatatcaagctattagt
tatggtttaaaatatggtagaaaagtgtgtgttataggacgctctatggaaagaaatctc
tataccactatggaacttggctatatcaaacttgatagaaaaattttcattgacgctgat
gaagtaagcaaatataaagacaatgaagtgctaattgtcaccacaggaagtcaaggtgag
acgatgagtgctttatatagaatggcaactgatgagcataaatttatcaaaatcaaacct
agcgatcaagttatcatttcagctaaagcaataccaggtaatgaagcaaatgtttctgct
gtgcttgattttcttttaaaagcaggggctaaagtagcttatcaagaatttagcgaaatt
catgtaagcggacatgctagtatagaagagcaaaaactcatgctaactttagtaaaacct
aaatttttcttaccagtgcatggagaatataatcacatcaataaacacaaagaaaccgct
ctaaaatgtggcatacctgaaagaaatatctacttaatgagtgatggtgatcaagtagag
ctttgtcaaaaatacatcaaacgtgtaaaaacagttaaaacaggaaaagtctttgtagat
aatcaaatcaacaaacaaatcgcagatgatgtagtaattgatagacaaaaactagcagat
agtggcatagttgtcatcattgctcagcttgataaagcaagtaaaacactgattaataaa
ccaagagtatttagttatggcttggtagctgataaacaagatggagcattctcaaaagaa
atgagtgatgttttaagtcaatttttcccaaatgtaaaagatgaaattttagataatcca
aaagttttagaagctcaaattagacaagtactaagaaagcatatttttagaaaaatcaaa
aaatatccaaccatagtaccaactatttttgtgatgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (12)   

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