KEGG   Clavispora lusitaniae ATCC 42720: CLUG_03974
Entry
CLUG_03974        CDS       T01149                                 
Name
(RefSeq) hypothetical protein
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
clu  Clavispora lusitaniae ATCC 42720
Pathway
clu03008  Ribosome biogenesis in eukaryotes
clu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:clu00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    CLUG_03974
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLUG_03974
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clu03021]
    CLUG_03974
   03019 Messenger RNA biogenesis [BR:clu03019]
    CLUG_03974
   03009 Ribosome biogenesis [BR:clu03009]
    CLUG_03974
   03016 Transfer RNA biogenesis [BR:clu03016]
    CLUG_03974
Transcription machinery [BR:clu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     CLUG_03974
Messenger RNA biogenesis [BR:clu03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     CLUG_03974
Ribosome biogenesis [BR:clu03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    CLUG_03974
Transfer RNA biogenesis [BR:clu03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    CLUG_03974
SSDB
Motif
Pfam: XRN_M
Other DBs
NCBI-GeneID: 8496932
NCBI-ProteinID: XP_002616733
UniProt: C4Y740
AA seq 483 aa
MTCVILKRDTETVTMRLSSALLRQKRLPTFVKKLSAPTWKVFHGCYCITTKGVPRGNGIF
LTTTPPLSQISPIYVKSWARKESNSILGEPFNPYEQLMAVLPAASGHTLPEVFRSLMSHP
DSEIIDFYPETFQIDMNGAKMSWQGIALLPFIDEKRLLTAVRAKYSLLTDDERERNTNKK
AQLFISSGNANYKKFIQACEEDREISFGAHRTGLAGKIRPLLSFSPDGETLFPLKEGELP
NVPNSAYFQAWYDFPESYPGKSMLLNGYIPHEKVLDESDKYTVLGRSRPNYNFQNVSSYV
NHGPCGEKDFLMYSMRRGGYRALLEMGQNANQTRNQGRSNHSQGNGNYGGKHYGNNHHGN
SNYGNNYGNQYGNYGNNQYGNQNYGNQNYGNNQYGNQQYGNNQYGNQNQYGNQYGNQNQY
GNQYRNNYGNNQYGNNQYQGQYGHQNQSRTDQYGSHSYSNHNQNTHGRSNYQSNRGGRSG
YRR
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgacgtgcgttatcttgaagcgggatacagagaccgttactatgaggctaagttcggcg
cttcttcgccagaagaggttgccgacattcgtaaaaaagttgtccgcgcctacttggaag
gtatttcatgggtgttattgtattactaccaagggtgtccctcgtggcaatggtattttc
cttaccactacgccccctttgctgcagatttcaccaatctacgtgaaatcgtgggcgagg
aaggaatcaaattcgattttgggtgaaccattcaatccgtatgagcaacttatggctgtt
ttgcctgctgcgtccggccacacgttgccagaagtgtttcgcagcttaatgtctcatcca
gacagtgagattatcgacttttaccctgagaccttccaaattgatatgaatggggctaaa
atgagctggcagggtattgcattgttgccgttcattgatgaaaaacgtttgcttactgca
gttagagcaaaatattccctattaacggatgatgagcgagagcgcaacaccaacaaaaaa
gcgcaattgttcatttcaagtggtaatgcgaactacaagaagtttatccaagcatgtgag
gaggaccgtgagatttcattcggtgcccacagaacaggcttggctggcaaaatacgccct
ttattatctttttcgccagatggagaaacattgttccctttgaaggaaggtgagttgccc
aacgttcccaattctgcttacttccaggcttggtacgactttccagaactgtacccaggt
aagtctatgttattgaacggatacataccacatgaaaaagtgcttgatgaactggacaaa
tacacagttctcggtcgcctgagaccaaactacaacttccagaatgtgagtagttatgtg
aatcatggaccgtgcggagaaaaggatttcctcatgtactcaatgcgccgtggcggttac
agagcattacttgagatggggcagaacgcaaaccagacgaggaaccaaggcagaagtaac
catagtcaaggaaacggcaactacggaggaaagcactacgggaacaatcaccatggaaac
agcaattatggaaataactatggaaaccaatacggaaactatggcaataatcaatacggg
aaccaaaactacggcaaccagaattatggtaacaaccaatatggtaaccagcagtatgga
aacaaccaatacggtaaccagaatcaatacgggaatcagtatggaaaccaaaaccaatac
ggaaatcagtatagaaacaactatggaaacaaccaatatggaaacaaccaataccagggt
caatatggccaccaaaaccaaagccggacagaccagtatggaagccactcttactccaat
cacaaccaaaatactcacggtcggctgaactaccaatctaaccgtggcggcaggtctggc
tacagacgttaa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (131)   
   KEGG ORTHOLOGY (1)   
   RefGene (127)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (143)   

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