KEGG   Columba livia (rock pigeon): 102089285
Entry
102089285         CDS       T02912                                 
Symbol
HFM1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X3
  KO
K15271  ATP-dependent DNA helicase HFM1/MER3 [EC:5.6.2.4]
Organism
clv  Columba livia (rock pigeon)
Brite
KEGG Orthology (KO) [BR:clv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:clv03036]
    102089285 (HFM1)
Enzymes [BR:clv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     102089285 (HFM1)
Chromosome and associated proteins [BR:clv03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    102089285 (HFM1)
SSDB
Motif
Pfam: Sec63 DEAD ResIII Helicase_C AAA_22
Other DBs
NCBI-GeneID: 102089285
NCBI-ProteinID: XP_013223388
UniProt: A0A2I0MDY0
Position
Unknown
AA seq 1442 aa
MFNSADVVFSLDNLFYERPDTRQRYPENKEPKICWLAPAPAIAEIPAADELQRELEKNAA
STRMGGRKHQKFIQQCKSNTEEVNDKSPGPLHVGIASEKEVLQLSTGEREKISFPHESLK
MVSLFLSSDQEKSKIGTGVSHQPGANFSQNKLLSNFPENSDDESAHSTFRKSLFKASRYT
YKNTEFKDRSVEVKEIDTYLNTSENMKEVRKEDLWRNNHNSPVTKASDFTLHRVNNGDIA
FKNGIKMESFSNASEILDITGTTGRKLENLRAVTEIPTQFRSIFKEFPYFNYAQSKALDD
LLYTDRNFVICAPTGSGKTVMFELAITRLLMEAPLPWINIKVVYMAPIKALCSQRFDDWK
EKFGPIGLSCKELTGDTVMDDLFEIHHADIIITTPEKWDSMTRRWRDNSIVQLVRLFLID
EVHVIKDEGRGATLEVVVSRMKTVQSSLWRLLENHDTVPPLRFVAVSATIPNAEDIAEWL
SDSKTPAVCLKIDEDQRPVKLRKIVLGFPCSDNQTEFKFDLTLNYKIASIIQTYSEQKPA
LVFCATRKGVQQAASVLAKDAKFLLSIEQKQRLQMSANSLKDAKLRDLLLYGVAYHHAGM
EVSDRKIIEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYVGGVFQEYSETDILQ
MIGRAGRPQFDTTATAVIMTRWSTREKYIQMLNGADIIESSLHRHLVEHLNAEIVLHTVT
DVTVALEWIRSTFLYIRALKNPTHYGFSSGLDKTGIEAKLQELCLKNLNDLSSFDLIRMD
EANNFKPTETGRLMAWYYIAFDTVKQFSTIKGTETLKELITMISNCTEFLDVKLRTNEKK
ILNTLNKDKDKITIRFPMEGKIKTREMKINCLIQAQLGCIPIQDFTLTQDTGRIFRNGLR
VTRWLSDFLASCKNNFTALLNSLMLAKCFRCKLWENSLHVSKQLEKIGVSLSNAMVNAGL
TTFQKIEDTNPRELELILNRHPPFGNQIKESVLHLPKYELDIEQLPKYSDTLAEILVTIK
LTNYEQLQTKRTATDFHYVTLLIGDADNQVIFNQKIMDSVLLKTGNWMKKIEVKRAHKSE
DISINLISSDYVGFDIQQLYTAFYLTPKTVGSKEFTNQKLKAASSHDVCCGSPQSLPAAK
VDTGGRSKQETIYKKYGNRECNHRCKNKDACGHDCCKTGVPPKSEINGDSKFSLYLADLR
SRNSISSVPPVKRLKMQMLNQAPNVDLKQFGFTPKPSLPALPRSSNKQLSSSPSVDRVDN
VNSLGVSQKQLQSWNYGKTNVLDVDFELRDDVWDDIDDEKLVFASNFANRELDKCEPLCQ
YPSSKATNDISIDLCTLKDETNIQNSVVSVVNSTSKANLSVQSGNADTFSFQEKNHSNLS
QELKTVQCSSISKINSDSSKFTRKEDFFIFTKEYEKEEDPRYLPDDEISDVKPFLGIFDG
LL
NT seq 4329 nt   +upstreamnt  +downstreamnt
atgttcaactccgcagatgtggtcttttcattggataatttattttatgaaagaccagat
acaagacaaaggtacccggaaaataaagagcccaagatttgctggcttgcacctgctcca
gctattgctgaaattccagctgcagatgagttacagagggaactggaaaaaaatgcagcc
agtactcgtatgggagggagaaagcaccagaagtttatacaacaatgtaagagtaacact
gaggaagtaaatgataaatcaccaggccctcttcatgttggaatagcttctgaaaaagaa
gtgctccaattaagcacaggagaaagagagaagattagttttcctcatgaaagtctgaaa
atggtttcattgtttctctcttctgaccaagaaaaatctaaaataggaacaggggtttct
catcaacctggtgcaaatttttcacaaaataagctattaagtaattttccagaaaacagt
gatgatgagagtgcccattcaacattcagaaaaagcttatttaaagcatctcgttatacg
tacaaaaatacagaatttaaagataggtctgtggaggtcaaagaaattgatacttactta
aatacaagtgaaaacatgaaagaagtgagaaaagaagatttatggagaaataatcataat
tctccagtaactaaagcctcagattttactcttcatagggtaaataatggggacattgca
tttaaaaatggaattaaaatggaatcattttctaatgcttcagagattctggatataaca
ggaactacaggaagaaaattggaaaatttgagggctgttacagaaataccaacccaattt
agaagtatttttaaggagttcccgtattttaactatgcacagtctaaagctttggatgat
cttctttatacagacaggaattttgtgatttgtgctccaactggctctggaaaaactgta
atgtttgagctagctattaccagattactcatggaagccccactgccttggataaatatt
aaagttgtttacatggcaccaataaaagctctatgcagtcagcgtttcgatgattggaaa
gaaaaatttggacctataggactcagctgcaaggagctgacaggagatacagtgatggat
gatttatttgaaatacatcatgctgatattattattactacacctgaaaaatgggatagc
atgactagaaggtggagggacaactctatagtccagcttgtacgactatttctcattgat
gaagtacatgttataaaggatgaaggccgtggtgcaacattagaagttgtagttagtcgg
atgaagactgttcagtcttctctttggcgtcttttagagaatcatgacactgttcctccc
ttgagatttgtagctgtttctgcaacaatcccaaacgctgaagatattgcagaatggctt
tcagatagtaagactcctgctgtatgtctgaaaatagatgaggatcaacgaccagtgaag
ctacgtaaaattgttcttggttttccttgcagtgacaatcagacagaattcaaatttgac
ttaactcttaactacaagatagcgagtattatacaaacatactcggaacaaaaaccagca
cttgtgttttgtgccacaagaaaaggagtacagcaggctgcttctgttcttgcaaaagat
gctaagtttctactgagtatagaacagaaacaaagactacagatgtctgcaaattcgttg
aaagatgccaaactgagagatcttttactgtatggtgtcgcttatcatcatgcgggtatg
gaggtatctgacagaaaaataattgaaggagcttttactgtaggagacttaccagtactt
tttactactagcaccctagcaatgggagtcaatctacctgcacatctggtggttataaaa
tccacgatgcactatgttggaggagtgttccaagagtacagtgaaactgatattctgcaa
atgattgggagagcaggaaggcctcaatttgatactacagctacagcagttattatgact
cgttggagtacaagggaaaagtatatacagatgttaaatggtgctgacataatagagagc
agcttgcacaggcatcttgttgagcacttaaatgcagaaatagtgctacataccgtcaca
gatgttactgtagctttggaatggatacgatcaacattcttgtatattagagccttaaaa
aatccaactcattatggtttttcatctggcttggataaaactggaattgaagcaaaatta
caagaactgtgtttgaagaacttaaatgatttatcatcttttgatttgatcaggatggat
gaagcaaataatttcaaaccaacggagactggaagattaatggcttggtattatattgcg
ttcgatacagtgaaacaattttccacaattaagggaacagagactttaaaggaattgatt
accatgatctccaattgcacagaatttctggatgtcaagttaagaacaaatgaaaagaaa
atactgaacactttgaataaagacaaggacaaaataacgatcaggtttccaatggagggg
aagataaaaacaagagaaatgaaaataaactgtcttattcaggctcagctaggatgcatt
cctattcaagactttactttgacacaagatactggcagaatatttagaaatggcttaaga
gttactagatggttatctgactttctggcatcatgtaagaacaactttactgctttatta
aactctttgatgttagcaaagtgtttcaggtgcaaactttgggaaaattcacttcatgta
tctaaacaattggaaaaaattggtgtatcactgtcaaatgctatggtaaatgctgggctg
acgacgtttcaaaaaatagaagacacaaatccaagggaacttgaattgattttaaacaga
catcctccttttggaaaccagataaaagaatctgttttgcaccttccaaaatatgaactt
gacattgaacagcttccaaaatacagtgatacattggctgaaatcttagtaaccatcaaa
ttaacaaactatgagcagctacagacaaagagaacggcgacagactttcactatgttaca
ttgctcataggagatgctgacaaccaagtcatttttaatcagaaaattatggattctgtt
ctgctgaaaactggaaattggatgaagaaaattgaagtgaaaagagctcataaatcagag
gacattagtataaacttaatcagttctgattatgttggctttgatatacagcaactatat
acagccttttacttaacaccgaaaacggtgggaagtaaggagtttacaaatcaaaaactg
aaagctgcatcttcacatgatgtgtgttgtggctcaccacaaagtcttccagcagcaaaa
gtagatacaggaggcagatctaaacaagagactatttacaagaaatatggaaacagggaa
tgcaaccatcgctgtaaaaataaagatgcgtgtggacatgactgctgtaaaactggagta
cctccaaagtctgagataaatggagattcaaagttttctttgtacctagctgatttaagg
agcagaaactcaatttcatctgtacccccagtaaaacggttaaagatgcagatgttaaat
caagctccaaatgtggatctcaaacaatttggttttactcctaaaccttcattgccagca
ttgccaaggtctagcaataaacagttgtcttcatcaccttcagtggaccgggtagataat
gttaatagcttaggagtatctcagaaacaactgcaatcctggaattatggaaagactaat
gtgttggatgtggactttgaactgagagatgatgtttgggatgatattgatgatgagaaa
ttagtatttgctagcaattttgccaatagagaattagataagtgtgaaccactttgccaa
tatccaagcagcaaagccacaaatgacatttcaatagatttatgcacattaaaagatgag
accaatattcagaactcagtcgtttctgtggttaatagcacatcaaaggcgaatttatct
gtacagagtggaaatgcagatacgttcagttttcaagaaaaaaaccactcaaatctttcg
caagagctgaaaactgtacagtgttcttcgatctcaaaaataaactcagactcttctaaa
tttactaggaaagaggattttttcattttcacgaaggaatatgaaaaagaagaggatccc
agatatcttcctgatgatgaaatcagtgatgtcaagccctttcttggaatatttgatggc
cttttgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (8)   
   UniProt (1)   
   RefSeq(pep) (7)   
DNA sequence (9)   
   RefSeq(nuc) (9)   
Protein domain (5)   
   Pfam (5)   
All databases (51)   

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