KEGG   Celeribacter marinus: IMCC12053_2066
Entry
IMCC12053_2066    CDS       T04098                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
cmar  Celeribacter marinus
Pathway
cmar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IMCC12053_2066
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmar03019]
    IMCC12053_2066
   03009 Ribosome biogenesis [BR:cmar03009]
    IMCC12053_2066
Enzymes [BR:cmar01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     IMCC12053_2066
Messenger RNA biogenesis [BR:cmar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     IMCC12053_2066
Ribosome biogenesis [BR:cmar03009]
 Prokaryotic type
  rRNA processing factors
   IMCC12053_2066
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: ALI56013
UniProt: A0A0N7HIS2
Position
complement(2013059..2016034)
AA seq 991 aa
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFID
YGGNRHGFLAFSEIHPDYYQIPVADREALLKEEMEYAKQQEEEEEEREKSKRGGGRRRRT
SSSRSRGQSVAADAVSDDAVETKEVDAPSEAAPSGEASDVEAASDTGATGVKGMDVHEPE
ASEADALIADEHAPVDEGTSPAFAVADTPVEEPVEDDASEDQPGEDQSNDNDDDDDAQSA
TDKDDDIESVADDDTAEEVRRVRKPRPRRYKIQEVVKVRQILLVQVVKEERGNKGAALTT
YLSLAGRYCVLMPNTARGGGISRKITNVADRKKLKEIAQEIDVPQGAGLIVRTAGAQRTK
TEIKRDYDYLKRMWEQIRELTLKSTAPAKIYEEGDLIKRSIRDLYSKEIDEVIVEGEGGF
RIAKDFMRMIMPTHAKNVINYKEQLPLFARYQVETYLGSMFNPTVQLKSGGYIVIDWTEA
LVAVDVNSGRATKEGSIEDTALKTNLEAAEEVARQARLRDLAGLIVIDFIDMEDRRNNAA
VEKRLKDHLKTDRARIQVGRISGFGLLEMSRQRLRPGMLEATTQPCHHCHGTGLIRSDDN
MALTILRQLEEEGTRKRSREVLLKAPVAVINYLVNYKREAIALIESRYGMAVRLEADPFM
ISPDFSIEKFKTATRVIKPEASNVISASSALMSQIDDETEADEDAVEAEDDATDAAQTDD
VTSSEAGDDEQQPKKRRRRRRRRRKSGEGDENGENGDTSEAGDSDAVSEPAQEQASEQGV
DGTSEDKPKRRRSRSRSRRSGSAADVTAPDAVTSGEAAAVEAAPAEAAPEAPVVADAPSE
KPKRSRSRAKKADAVTTDAVSADAAPVADAPVADSSAQETPKPKRKRRTKAEIEAEKAAK
DAGTDVKADEAPKPKRKRRSKAEIDAEKAAKAAAQEPVAAETVVPDAPKAEPVKVDAPVV
EAAVAPAPAPAAEPAVEAKPKPKRKGWWSLG
NT seq 2976 nt   +upstreamnt  +downstreamnt
atggctaaaaaaatgcttatcgatgccacccacgcggaagagacccgcgttgtggtggtc
gacggaaacaaggtcgaggaattcgactttgaatcggaaaacaaacgccagctcgctggc
aacatctatctcgcaaaagtaacacgggtcgaaccctcgcttcaggcggcgttcattgat
tatggcggaaatcgtcatggctttctcgcgttttccgagattcatcctgattattaccaa
atccctgtggcagaccgtgaggctttgctcaaagaggaaatggaatacgccaagcagcaa
gaagaagaagaggaagagcgcgagaagtccaagcgcggtggcggtcgtcgtcgtcgcacc
tcatcttcgcgttcacgcggccaatctgtagcggctgatgccgtgtcggatgatgcggtt
gagaccaaagaggtcgacgccccatccgaagctgcgccgagtggtgaagcttctgacgtt
gaagccgcctctgataccggtgcaactggcgtcaaaggcatggacgtgcatgagccagaa
gcctccgaagcggatgcgctgattgcagacgaacacgcgcccgtagacgagggcacatcg
cccgcgtttgccgtggcagatacgcccgttgaagaacccgttgaggatgacgcctctgag
gatcaacccggtgaggatcagtccaacgacaatgatgatgatgacgatgctcaaagtgcc
acagacaaagacgatgacatcgaaagcgtggccgacgatgacaccgccgaagaggtgcgc
cgcgtacgcaaaccccgtccgcgccgttacaaaatccaagaagttgtaaaagtccgtcaa
attctgttggttcaggtcgttaaggaagagcgcggcaacaaaggcgcggctttgaccacc
tacctgtcgcttgcgggtcgctactgtgtcttgatgccaaacaccgcgcgcgggggtggc
atttcacgcaaaatcaccaacgtggccgaccgtaagaaactcaaagagattgcccaagag
atcgacgtgccacaaggtgcgggtctgattgtgcgcaccgctggcgcacaacgcaccaag
accgagatcaaacgcgattatgattacctcaagcgtatgtgggagcagattcgcgagttg
acgctcaaatccaccgcgcccgcgaaaatctacgaagagggcgaccttatcaaacgctcg
atccgcgatctctattcgaaagagatcgacgaggttatcgttgagggcgagggcgggttc
cgcatcgccaaagacttcatgcggatgattatgccgacccacgccaaaaacgtgatcaac
tacaaagaacaactgccgttgttcgcccgctatcaggtcgaaacctaccttggctcgatg
ttcaacccgactgttcaactcaaatcgggtggctatatcgtcatcgattggaccgaggcg
ctcgtcgccgttgacgtcaactcgggtcgtgcgaccaaagaaggctcgattgaggacacc
gcgctcaagaccaaccttgaggccgccgaagaggtggcccgtcaggcccgtctgcgcgac
cttgcgggtctgattgtgatcgactttatcgacatggaagatcgccgcaacaacgcggcc
gttgaaaaacgtcttaaggatcatttgaaaaccgaccgtgcgcgcatccaagtgggtcgt
atttcgggctttggtttgcttgaaatgtcgcgtcaacgtctgcgtccgggcatgttggaa
gccacgacacagccgtgtcaccattgccacggtacgggtctgatccgctctgatgacaat
atggcgctcacgatcctgcgccagttggaggaagagggcacacgcaagcgctcgcgcgaa
gtgctgcttaaagcgccggttgcggtcatcaactatctggtgaactacaaacgcgaagcg
attgcgctgattgaaagccgctatggcatggctgtgcgtcttgaggccgatccgttcatg
atctcgcctgatttctcgatcgagaaattcaaaactgccacccgcgtgatcaagccggaa
gccagcaatgtgatttcggcatcctctgcgttgatgtctcagatcgatgatgagacggag
gccgatgaggatgcggttgaggccgaagatgacgcaacagacgcggcgcagaccgatgat
gtgacatcatccgaggccggtgatgacgagcagcagcccaaaaaacgccgccgtcgtcgt
cgtcgtcgccgcaagtccggtgagggtgatgaaaacggtgagaacggcgatacgagcgaa
gcgggtgacagcgatgccgtgtccgagcctgcacaagagcaagcctctgagcaaggtgtt
gatggtacgtccgaggacaagccaaagcgccgccgtagccggtcacgctcgcgccgttct
ggttctgccgctgatgtaactgcgccagatgctgttacatctggtgaggcagcggctgtt
gaggccgctcccgctgaggctgcacccgaggctccagttgtggcagacgcgccaagtgag
aagccaaagcggtcacgctcacgtgcaaagaaagctgatgcggtgacaacagatgccgtg
tctgcggacgccgcacctgtggctgatgcacctgtggctgattcatcggcacaagagacg
cccaaaccaaagcgcaagcgccgcaccaaagccgagatcgaggccgaaaaagccgcgaaa
gacgccggtacggatgtgaaagcggacgaggccccaaagccaaagcgcaaacgccgtagc
aaagccgaaatcgacgcagagaaagccgccaaagcggccgcccaagagccggttgccgcc
gagacggtcgtgccagacgcgcctaaagcggagcctgtgaaggttgacgcccccgttgtg
gaggctgcggttgcacctgctcccgctcccgcagcggaaccggccgtcgaagccaagcca
aaacccaagcgcaaggggtggtggagcctcggctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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