KEGG   Cucurbita maxima (winter squash): 111485670
Entry
111485670         CDS       T05246                                 
Name
(RefSeq) putative exosome complex component rrp40
  KO
K03681  exosome complex component RRP40
Organism
cmax  Cucurbita maxima (winter squash)
Pathway
cmax03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111485670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmax03019]
    111485670
Messenger RNA biogenesis [BR:cmax03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     111485670
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N RRP4_S1
Other DBs
NCBI-GeneID: 111485670
NCBI-ProteinID: XP_022988424
UniProt: A0A6J1JLH7
Position
Unknown
AA seq 243 aa
MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFTKP
NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNALLNSETLSGVQQRIMVDMLLNNLK
LSS
NT seq 732 nt   +upstreamnt  +downstreamnt
atggttgaaaaatcttctagttcgtcatctactctcgttgatcagccagttgttccagga
gatgtggttctcgacctctccaacatggccaatgaaaccatcaagcttggaggcggtctt
cgacaggaccacgatgctatttctgtctccaaagttggaaagctgaggttcacgaagccg
aacaaatattgggttgaaagctcacagaaaaggtacgtgccatgtgtggaagattgtgtt
cttggaatcgtggttgactctagatccgataattttcttgttgatattaaaggtccggca
ttggcctttcttcctgttcttgcatttgaaggaggaaccaggcgaaacatacccaaattt
gagatgggtgccctgctttatgtgagggtagtgaaggcaaaccctggtatgaatcctgag
ttggcatgcactgatgccagtgggaaagcagctggatttggcctcctaaaagatggctac
atgtttgaatgttcaactggcttatcaagaatgcttctaagctcgccaacatgtccagtt
cttgaatcttttgggaaaaagctttcattcgagacagcagttggtttgaatggccgagtt
tgggtgaatgctgattctccatccacaaccattgtggtttcaaatgcactattgaactcc
gagactctgtctggggtccaacagagaatcatggtggacatgctccttaacaatttgaag
ctgtcaagttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system