KEGG   Clavibacter michiganensis subsp. nebraskensis: CMN_02036Help
Entry
CMN_02036         CDS       T02530                                 

Gene name
ligD
Definition
hypothetical protein
Orthology
K01971  
DNA ligase (ATP) [EC:6.5.1.1]
Organism
cmc  Clavibacter michiganensis subsp. nebraskensis
Pathway
Base excision repair
Nucleotide excision repair
Mismatch repair
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cmc00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    CMN_02036 (ligD)
   03420 Nucleotide excision repair
    CMN_02036 (ligD)
   03430 Mismatch repair
    CMN_02036 (ligD)
   03450 Non-homologous end-joining
    CMN_02036 (ligD)
Enzymes [BR:cmc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CMN_02036 (ligD)
DNA repair and recombination proteins [BR:cmc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CMN_02036 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
2144563..2147067
Genome map
AA seq 834 aa AA seqDB search
MAGAKQQVEVEGRRITLTNLDKVLYPATGTTKGDVIAYYAAIAPHMIPHLRDRPVTRKRW
VDGVGTDEHPAKMFFQKDLDAHTPEWVLRRAIQHRDHANDYPLANDVATLTWLGQIAALE
LHVPQWRFGRTGDVRRPDRLVLDLDPGPGAGLPECVEVAKAARAILRDMGLEPYPVTSGS
KGIHLYAALDGSHDADAISEVAHELARALEADHPDLVVSDMRKALREGKVLVDWSQNNPA
KTTVAPYSLRGRSRPTVAVPRTWRELASPTLRHLELDEVVARMRTREDPLAPVEEGHRES
LEPTRERLAGFAHKDADAAGDRLATYRSKRDAAKTSEPVPADAPAPSDGSSFVIQEHHAR
ALHWDFRLEHDGVLVSWALPKGVPTEHGTNHLAVQTEDHPLEYGSFEGTIPAGEYGGGEV
TIWDAGTFELEKWRDGHEVIATLHGRGHGTGIDGPRRYALIHTGGHGKADANWLIHLMEP
ADAPAAHHPKPARPAALAKAGGRTRVGARRKGRAAFAAAPMLATAATGAGLDSDEEWAVE
MKWDGYRAIAAVADGRATITSRNGVDLTAAFPELADLPDQLAADAVLDGEIVVLGDGGRP
DFGLLQTRLGLTGEKDIARARKAAPVHLMLFDALAIGDRVLVGEPYRERRAALLDAVTSP
GRGRIQVPPAFDGDLDGALATSRELGLEGVVAKRVDAPYESGRRSSAWIKIKHHRAQEVV
VGGWRPGSGSRSSGIGSLLVGVPGPDGLMYAGRVGTGFTERDLADALRRFRPLARKTSPF
ADVPAAEARDAHWITPRLVGEVEFAEWTSTGRLRQASWRGWRHDKSPDEVVRED
NT seq 2505 nt NT seq  +upstreamnt  +downstreamnt
atggcgggcgcgaagcagcaggtggaggtcgaggggcggcggatcacgctcacgaacctc
gacaaggtgctgtacccggccaccggcacgaccaagggcgacgtgatcgcctactacgcc
gccatcgcgccgcacatgatcccgcacctccgcgaccggcccgtgacgcggaagcggtgg
gtcgacggcgtcggcaccgacgagcacccggcgaagatgttcttccagaaggacctcgac
gcccacacgcccgagtgggtgctccgccgcgcgatccagcaccgcgaccacgccaacgac
tacccgctcgcgaacgacgtcgcgaccctcacctggctcgggcagatcgccgcgctggag
ctgcacgtgccgcagtggcgcttcggccgcacgggcgacgtgcgccggcccgaccggctg
gtgctcgacctcgacccgggccccggcgccggcctcccggagtgcgtcgaggtcgcgaag
gccgcgcgcgcgatcctccgcgacatgggcctcgagccgtacccggtgacgagcggatcc
aagggcatccacctctacgccgcgctcgacggcagccacgacgcggacgcgatctccgag
gtcgcgcacgagctcgcccgcgcgctcgaggccgaccaccccgacctcgtcgtgagcgac
atgaggaaggcgctccgcgagggcaaggtgctcgtcgactggagccagaacaaccccgcc
aagaccacggtcgcgccctactcgctgcgcgggcgctcccggccgaccgtcgccgtgccc
cgcacctggcgcgagctcgcgtcgccgacactccggcacctggagctggacgaggtggtc
gcgcggatgcggacgcgcgaggatccgctcgcccccgtcgaggagggccaccgcgagagc
ctcgagccgacgcgcgagcggctcgcgggattcgcgcacaaggacgcggacgccgccggc
gaccggctcgcgacctaccggtccaagcgcgacgccgcgaagacgagcgagcccgtgccc
gccgacgcgcccgcgcccagcgatggcagctccttcgtgatccaggagcaccacgcccgc
gcgctgcactgggacttccggctcgagcacgacggcgtgctcgtgagctgggccctcccc
aagggcgtgcccaccgagcacggcacgaaccacctcgcggtgcagaccgaggaccacccg
ctggagtacgggtccttcgagggcaccatccccgcgggcgagtacggcggcggcgaggtc
accatctgggacgcgggcaccttcgagctggagaagtggcgcgatgggcacgaggtcatc
gcgacgctgcacgggcgcggccacggcaccggcatcgacgggccgcgccgctacgcgctc
atccacacgggcgggcacgggaaggccgacgccaactggctgatccacctgatggagccg
gcggacgcgcccgccgcgcaccacccgaagcccgcgcgccccgccgcgctcgcgaaggcg
ggcggccgcacgcgcgtcggcgcccgccggaagggccgcgccgcattcgccgccgcgccc
atgctcgcgaccgccgccaccggcgccggcctcgactccgacgaggagtgggccgtcgag
atgaagtgggacggctaccgcgcgatcgccgccgtcgcggacggccgggcgaccatcacg
agccgcaacggcgtcgacctcaccgccgccttccccgagctcgccgatctgcccgaccag
ctcgccgccgacgcggtgctcgacggcgagatcgtggtgctgggcgacggcggccgcccc
gacttcggcctcctgcagacgcgcctcggcctcaccggcgagaaggacatcgcgcgtgcg
cggaaggccgcgcccgtgcacctcatgctcttcgacgcgctcgcgatcggcgaccgcgtg
ctcgtcggcgagccgtaccgggagcgccgcgccgcgctcctcgacgcggtcacgtcgccg
ggccgcggccggatccaggtcccgcccgcattcgacggcgacctcgacggggcgctcgcc
acgagccgtgagctcggcctcgagggcgtcgtcgccaagcgcgtcgacgcgccctacgag
tcgggccggcggtcgagcgcctggatcaagatcaagcaccatcgcgcgcaggaggtggtg
gtcggcggctggcgccccggatccggcagccggtcctccggcatcggctcgctgctcgtc
ggcgtccccggccccgacggcctgatgtacgcgggccgcgtcggcacgggcttcaccgag
cgcgacctcgccgacgccctgcgccggttccggccgctcgcgcggaagacgagccccttc
gccgacgtgcccgccgccgaggcccgcgacgcgcactggatcacgccccgcctcgtcggc
gaggtcgagttcgccgagtggacctccaccggccgcctccgccaggcgtcgtggcgcggc
tggcggcacgacaagtcgccggacgaggtcgtgcgcgaggactga

DBGET integrated database retrieval system