KEGG   Clavibacter nebraskensis: CMN_02243
Entry
CMN_02243         CDS       T02530                                 
Symbol
mfdA
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
cmc  Clavibacter nebraskensis
Pathway
cmc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CMN_02243 (mfdA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cmc03400]
    CMN_02243 (mfdA)
Enzymes [BR:cmc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CMN_02243 (mfdA)
DNA repair and recombination proteins [BR:cmc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CMN_02243 (mfdA)
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII RecG_dom3_C DUF3638
Other DBs
NCBI-ProteinID: CCE76181
UniProt: M5BAF4
Position
complement(2374428..2378060)
AA seq 1210 aa
MILQGLIPALSRASTFDDALASASRDADFSLTEGLQGPLLAGLLRQRIQRGIPGCLFVVT
ATGRESEGMRRSLAAVLPDAEILEFPAWETLPHERLSPSAEIVGKRIHALRRMEQWHAAL
GQGAREVPADQVRPLVIVASVRAALQPVADNLTELAPVQLATGSRGHDLSELAVRLVDLA
YSRVDMVTRRGEFAVRGGILDVFPPVSDHPVRIEFFGDEVDQMRPFAVADQRSLEEEITS
VELPPSRELLLSAPVRQRAREMQHEFPNLQQMLAKIAEGIPVEGMESLAPALVDKLVPVT
HYLPVDAAIAVVSPERVSTRAQSLADTNREFLDAAWNAATAGAQAPIDLASGDFLSLGRL
RDARGPRRWWTLSGFQANDVLPEDLGIDEVMTVRIQADPVPSFAGNADGAIEHARERLAA
GWSVGVVAQGSGLVERADTVLREAGVPARVVEEFPAEPEPGIAYLLRSAIDAGFEMPEVK
LALLTESEFYGRAAGYDSRQVKKLATRRKNVVDPLQLKPGDHVVHTTHGIGRFVELTQRE
VSSGGRNAVKTRREYLVIEYAPSKRGYPGDKLFVPTDQLDLLSRYVGGEEPALSKMGGSD
WAAAKGKARRAVRDIAVELVKLYSARMASRGHSFPPDTPWQRELEEAFPFMETPDQLTVI
DEVKRDMESPIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVVMLVPTTLLVKQHFETF
SERFAGFPVHLRQLSRFQTDKESRETIKGLEDGSVDVVIGTHRLLTGRIAFKDVGLVIID
EEQRFGVEHKDALKKLKANVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTF
VGPNSEKQIAAAIRRELLREGQVFFVHNRVSSINRVASELAELVPEARVAVAHGKMSESM
LEQVIVDFWERKFDVLVSTTIIETGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRER
AYAYFLYDADKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGGEQSGHIQG
VGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKLSTAA
SPTATDDQIDRVIEELADRYGEPPVEVDNLVRVSRLRRVAQRAGLSEVVAMGPNLRIAPA
DLADSKQVRLQRMYPGSRLFAQTNAVTVPLPKRDGEPLPDAELVDWVRQLLDAVFVVEPA
PAAKESAPKS
NT seq 3633 nt   +upstreamnt  +downstreamnt
gtgatcctccagggcttgatcccggcgctctcgcgcgcctccacgttcgacgacgccctc
gcatcggcctcccgcgacgccgacttctccctcaccgaggggctccaggggccgttgctc
gcggggctcctgcgccagcgcatccagcgcggcatcccggggtgcctcttcgtcgtcacc
gccaccggtcgcgagtccgagggcatgcgccgcagtctcgctgccgtgctgccggacgcc
gagatcctcgagttccccgcgtgggagacgctgccgcacgagcggctcagcccgagcgcg
gagatcgtcggcaagcggatccacgcgctccgccgcatggagcagtggcacgccgcgctc
ggccagggggcccgcgaggtgccggccgaccaggtgcgcccgctcgtgatcgtcgcctcg
gtgcgcgcggccctgcagcccgtcgccgacaacctcactgagctcgcgcccgtgcagctc
gccaccggcagccgcgggcacgacctctccgagctcgccgtgcgcctggtcgacctcgcg
tactcgcgcgtcgacatggtcacacgacgcggcgagttcgcggtgcgcggcggcatcctc
gacgtcttcccgcccgtctccgaccaccccgtgcgcatcgagttcttcggcgacgaggtc
gaccagatgcggccgttcgcggtcgccgaccagcgctcgctcgaggaggagatcacctcg
gtggagctgccgccgagccgcgagctgctgctgagcgcgcccgtgcgccagcgcgcccgc
gagatgcagcacgagttcccgaacctgcagcagatgctcgcgaagatcgccgagggcatc
ccggtggagggcatggagtcgctggcgcccgcgctcgtcgacaagctcgtccccgtcacg
cactacctgccggtggacgcggccatcgccgtcgtctcgcccgagcgcgtgtccacccgt
gcgcagagcctcgccgacacgaaccgcgagttcctcgacgccgcgtggaacgccgccacg
gcgggcgcgcaggcgcccatcgacctcgcgtccggcgacttcctctcgctcggccgcctt
cgggacgcccgcggcccgcgccgctggtggaccctctcgggcttccaggccaatgacgtg
ctgccggaggacctcgggatcgacgaggtcatgaccgtgcgcatccaggcggatcccgtg
ccgagcttcgcgggcaacgccgacggcgccatcgagcacgcgcgcgagcgcctcgcggcc
gggtggagcgtgggcgtcgtcgcccagggatccggcctcgtcgagcgcgcggacacggtg
ctccgcgaggcgggcgtcccggcgcgcgtggtcgaggagttccccgccgagcccgagccc
ggcatcgcctacctcctccgctcggccatcgacgcgggcttcgagatgcccgaggtcaag
ctcgcgctcctcaccgagagcgagttctacggccgggccgccggctacgacagccgccag
gtcaagaagctcgccacccggcgcaagaacgtggtggatccgctgcagctcaagcccggc
gaccacgtcgtgcacaccacgcacggcatcggccgcttcgtggagctgacgcagcgcgag
gtctcctcgggcggccgcaacgcggtgaagacccggcgcgagtacctcgtcatcgagtac
gcgccctcgaagcgcggctacccgggcgacaagctcttcgtgcccaccgaccagctcgac
ctcctcagccgctacgtcggcggggaggagcccgccctcagcaagatgggcggcagcgac
tgggccgccgcgaagggcaaggcccgccgggccgtgcgcgacatcgcggtcgagctcgtg
aagctctactccgcgcgcatggcgtcgcgcgggcactccttcccgccggacaccccgtgg
cagcgcgagctcgaggaggcgttccccttcatggagacgcccgaccagctcaccgtcatc
gacgaggtcaagcgcgacatggagagccccatccccatggaccgcctcgtctcgggcgac
gtcggcttcggcaagaccgagatcgccgtgcgcgccgcgttcaaggccgtgcaggacggc
aagcaggtcgtgatgctcgtgccgacgacgctgctcgtgaagcagcacttcgagaccttc
tccgagcgcttcgccgggttccccgtgcacctgcgccagctcagccggttccagaccgac
aaggagtcgcgcgagaccatcaagggcctcgaggacggctcggtcgacgtcgtcatcggc
acccaccgcctcctcactggcagaatcgcgttcaaggacgtcggcctcgtcatcatcgac
gaggagcagcgcttcggcgtcgagcacaaggacgcgctgaagaagctcaaggccaacgtc
gacatcctcgcgatgtcggccacgccgatcccgcgcacgctcgagatggcggtcaccggc
atccgcgagatgtcgacgctcgcgacgccgccggaggaccggcacccgatcctcaccttc
gtgggcccgaacagcgagaagcagatcgccgccgccatccgccgcgagctgctgcgcgag
ggccaggtgttcttcgtgcacaaccgcgtgtcgagcatcaatcgggtcgcgtcggagctg
gccgagctggtgcccgaggcgcgcgtcgcggtggcccacggcaagatgagcgagtcgatg
ctcgagcaggtcatcgtcgacttctgggagcggaagttcgacgtgctcgtgtcgaccacc
atcatcgagaccggcctcgacatcgccaacgcgaacacgctcatcatcgaccgggccgac
aagtacggcctcagccagctgcaccagctgcgcgggcgcgtcggccgcgggcgggagcgc
gcgtacgcgtacttcctctacgacgccgacaagccgctgtctgagacggcgcacgaccgc
ctgtccaccatcgcggcgaacaacgagctgggatccggcatgcaggtcgcgctcaaggac
ctcgagatccgcggcgcgggcaacctgctgggcggcgagcagtccggccacatccagggc
gtgggcttcgacctgtacctgcgcatgatcggcgaggccgtctcgaccttccgcggcgac
gtcgcggagggccagaccgagctgcggctcgagctgccggtcgacgcgcacatccccgag
gagtacgtcgacagcgagcggctgcgcctcgaggcgtaccagaagctctccaccgcggcc
tcgcccacggcgacggacgaccagatcgaccgggtcatcgaggagctggcggaccgctac
ggcgagccgcccgtggaggtcgacaacctggtgcgggtctcgcgcctgcgtcgcgtcgcg
cagcgggccgggctcagcgaggtcgtcgcgatggggccgaacctgcgcatcgcgccggcc
gacctcgcggacagcaagcaggtgcgcctgcagcgcatgtacccgggcagccggctgttc
gcgcagaccaacgcggtcacggtgccgctgcccaagcgcgacggcgagccgctgcccgac
gccgagctggtcgactgggtgcggcagctgctcgacgccgtctttgtggtggagccggcg
ccggccgcgaaggagtccgcgccgaagtcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system