KEGG   Cyanidioschyzon merolae: CYME_CMQ426C
Entry
CYME_CMQ426C      CDS       T00175                                 
Name
(RefSeq) similar to DNA polymerase lambda
  KO
K03512  DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03410  Base excision repair
cme03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CYME_CMQ426C
   03450 Non-homologous end-joining
    CYME_CMQ426C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cme03400]
    CYME_CMQ426C
Enzymes [BR:cme01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CYME_CMQ426C
DNA repair and recombination proteins [BR:cme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     CYME_CMQ426C
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    X-family DNA polymerases
     CYME_CMQ426C
SSDB
Motif
Pfam: DNA_pol_B_palm DNA_pol_B_thumb DNA_pol_lambd_f
Other DBs
NCBI-GeneID: 16996484
NCBI-ProteinID: XP_005538299
UniProt: M1VKY5
Position
17:1110648..1112795
AA seq 715 aa
MPRATNRSSSAAESAADNGDTQNSGNLGSGSARAAPRLRGPGRARGAWRGVANASAATSG
RVPASRSRVTRSRSGTSASPEATESTDPVATATGAAPPTPVELSAVLASVSANEYNQALA
AELLELAEVYESGFASAYEPSLFQQFDERDLRRAQSLRYAAWRVRQLPENCGILVLDEAS
LAQVLFEGQWIAFAKEPHLPVSQNGVPVHIDVHHAEAAAAAATGLDTEDAPYLKLFQRVP
MTRVIFFDVLPAVREFALLWGSGIARGRSPENLLELRTFRDESAAQALTLFHCVWHAKRI
RAMQWYHAGCKTLEEVASRCRLTDKRFQLGILYYDDFRLLVPYGEVAAITSIFASASTEI
DADLSVIPVGALRRNYQECGDVDLIVTGEPETLHPDGERYGSLKALIKLLRERHFITDEA
VSIEVAMQRLQRIRESEAYMAAHMGLLPDERTKPYVRPDWAGIIQAPGYPSGPDGNRHSD
SCTDAAYNLPALGGAMVQTASSWAGVDLLSSSLPAAESMAGVTASVSEESTALMATAAKS
QSPLPYWWATHLHDDELDTEDEVTWSGVVRLAGKPHRRVDIYVVEKDELPWALICYTGSR
AFVNALLRHARQKGLYLSARGVRKLGHALGPGSGGFVALEGPAMHKERSSDAGSRAASTA
MDCSDTRVEVDPMERFRNVHSERAAFEALGLRYREPTERESADDLIVAHEIPEVS
NT seq 2148 nt   +upstreamnt  +downstreamnt
atgccccgcgcaacgaatcggagttctagtgcggctgaaagtgctgctgacaacggggat
acgcagaactcgggcaacctggggagtggaagcgcgcgagcagcgccgcgactgcgaggc
cccgggagagctcgtggtgcctggcgtggagtagcaaacgcgagcgctgctacctcgggt
cgggtgcctgcatcgcgatcacgagtcacgcgaagtcgatcagggaccagtgcgagtcca
gaggcgacagaatcgacggatccagtggctacggcaaccggagcagctccgccgacacct
gtggagctctccgcggtactcgcctcggtaagtgcaaacgaatacaatcaggcgctcgca
gcggagttgctggagttagcggaagtctacgagtcggggtttgcatcggcgtatgagccg
tcgctattccagcagtttgatgagcgagacttgcggcgagcgcagtcgctccggtatgcg
gcctggcgcgttcgccaacttcccgaaaactgcggtattttggtactggatgaagccagc
ctagcacaagtgttgtttgagggacaatggatagcgtttgcaaaggagcctcatttacct
gtaagtcagaacggcgtacctgtccacatagacgtgcaccatgctgaggcggcagcagct
gcagccacgggactcgacaccgaggacgcgccgtatctaaaactcttccagagggttccc
atgacgcgcgtgattttcttcgatgtgctcccagccgtgcgcgaatttgctctactttgg
ggatcgggtatcgccagaggcagatcaccagaaaatctgctcgagcttcgcacctttcga
gacgagagtgcagcccaggcgctgacgctctttcattgtgtctggcatgcgaaacgaatt
cgcgcaatgcagtggtatcatgcggggtgcaaaacgctggaagaagttgcatcgcggtgt
cgtctcacggacaagaggtttcaattggggattctctactacgatgattttcggctcttg
gtgccgtacggcgaggttgcagcgattacgagcatctttgcgtcggcgtctacggagatc
gatgcagatctctcggtgattccggtcggtgcacttcgacgcaattaccaggaatgcggc
gatgtggacttgatcgtgacaggcgaaccggaaaccctgcaccccgacggtgaacgatac
ggctcgttgaaagcgcttatcaaactgctccgtgagcgacatttcataacggatgaggcg
gtttccatagaggttgcaatgcagcgactgcagcggatacgcgagagcgaggcctacatg
gccgcgcacatgggtctgcttcccgacgagcgcacgaagccctatgtccgacccgactgg
gcgggcatcatccaggcgcccggatacccgtccgggccggatggtaacaggcacagcgac
agctgcaccgatgctgcgtacaaccttccagcactgggcggtgccatggtgcaaactgca
tctagctgggcgggcgtggacttgctttcctcgtcgctgccagcagcggagtccatggct
ggcgttacggcatcggtgtcggaggagtcgactgccctgatggcaacggccgcgaagtca
cagtccccgctaccgtactggtgggcaacgcatctgcacgacgacgaactcgatacggag
gatgaggtcacctggtctggagtcgttcgtctcgccgggaaaccgcatcgcagagtggat
atctatgttgtcgagaaagatgagctaccctgggcactgatctgctacacgggctcgcga
gcgtttgtgaacgccttgttgcgccacgcccggcagaaaggattgtacctgagtgcccgt
ggtgtccgaaagctaggtcatgcgttgggtccaggctcgggaggtttcgtagcgctcgaa
gggcccgcgatgcacaaggagcgatcgtcggacgcaggctcccgcgcagcgtcaactgcg
atggactgctcggatacgcgggtcgaggtcgatcccatggaacggtttcgcaacgtgcat
tccgagcgtgcagcgttcgaagcactcggtctgcggtatcgagagcccaccgaacgggaa
tcagcagatgatctcatcgttgctcatgaaataccggaagtatcttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (33)   

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