KEGG   Cyanidioschyzon merolae: CYME_CMT194C
Entry
CYME_CMT194C      CDS       T00175                                 
Name
(RefSeq) nonsense-mediated mRNA decay protein 3
  KO
K07562  60S ribosomal export protein NMD3
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03008  Ribosome biogenesis in eukaryotes
cme03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CYME_CMT194C
   03008 Ribosome biogenesis in eukaryotes
    CYME_CMT194C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cme03009]
    CYME_CMT194C
Ribosome biogenesis [BR:cme03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    CYME_CMT194C
SSDB
Motif
Pfam: NMD3 NMD3_OB NMD_SH3 TMEM72
Other DBs
NCBI-GeneID: 16997740
NCBI-ProteinID: XP_005539220
UniProt: M1VCF6
Position
20:complement(500189..501931)
AA seq 580 aa
MGTTSVQDQSTVTILCCLCGAPITANPSNMCVHCLRSQVDLTQGFPKQCALVYCKFCGRY
LVPPKTWVRADLESKELMTICLKRLKRLVKLHLVDAAFVWTEPHSRRIRLRLTVQDEVLN
RTILEQSFIVEFVVELQQCADCKREAAKIEAWEAVVQLRQRVDHKRTLFYLEQLILKHNA
HEDVLGIRQQKDGLDFYFVHRSHALKFLSFLHNVACVRQRQSNHLVSHDPSNNVYRYKYT
FSAEIPPICREDLVYLPPRVATQLGGLSSLLLVHRITNQIRLLDPLTGFEHHIDGATYWR
LGLTALMNARRLTAFVVLDVEPVERDPAATSCGHLDQRFRLADATVARAADLGVNDQQFL
VRTHLGNILKAGDLVLGYDLVSANLNESDLFESLQSDSLKATLPEIVLVKRGYPQRDRTK
QRIWTLRELPKDDGDVGEHRHALREGARVTGRQRDQRDVALERDREEFMQELEQDPELRA
TVNLYKDPTKFVEDGLGRLGIRYPGDRKWTASERAQGQSRRNVQNANRFDGQRGMNAYAV
LEADTDADQSDDYPSVSLDELLDGLDISDDADQGQDAVTS
NT seq 1743 nt   +upstreamnt  +downstreamnt
atgggtacgacttcagttcaggaccaatcgacagtcacgattctatgttgtctctgcggg
gcgccaattaccgccaacccgagcaacatgtgcgtacactgtttgcggagtcaggtagac
cttacgcagggcttcccgaagcagtgtgcgctggtgtactgcaagttctgtggtcgctac
cttgttccaccgaaaacttgggtccgtgcggatcttgaatcaaaggagttgatgacgatc
tgtctaaagcgactgaagcggcttgtgaagctgcaccttgtcgatgcggcttttgtatgg
acggagccgcactcgcggcgcatccgacttcgcttaaccgtacaggacgaagtcctgaac
cgcaccattctcgaacaatcgtttatcgttgagttcgtagtggaactccagcagtgcgcg
gactgtaaacgggaagctgcgaaaatcgaggcttgggaagccgtcgtccagctccgacag
cgcgtagaccacaagcgaacgctcttctatcttgagcagttgattctgaagcacaacgct
cacgaggatgttttaggcattcgacagcagaaggatggactcgacttttactttgttcat
cgttcacacgcgctcaaattcctgagctttctgcataacgttgcctgtgttcgtcaacgt
cagagcaatcatctggtgtcgcatgaccccagcaacaacgtgtatcgatacaagtatacg
ttttcagcggaaataccaccaatttgccgcgaggatctggtgtatctgccaccacgagtt
gcgacgcaactgggtggactctccagcctcctgctcgtgcatcggatcacgaaccagatt
cgtctgcttgatccgctcactgggtttgagcaccatatcgacggggccacctactggcgc
ctcggcttaacagcattgatgaatgcgcgtcgcctcacagcgtttgtggtgctcgatgtg
gaacctgtggagcgggatccagcggcgactagctgcgggcacctggaccagcgatttcgc
cttgcagacgcaacggttgctcgtgctgcagacctgggtgtgaatgatcaacagtttttg
gttcgcacacaccttggaaacattctcaaggcgggtgaccttgtgctcggttacgatcta
gtttcggccaatttgaatgagagcgacttgttcgaatccctgcaaagcgattcgttgaaa
gcgacactgccggaaatcgttctcgtgaagcgaggttatccccagagggatcgcaccaag
cagcggatatggactttgcgcgagcttcccaaagatgatggcgatgttggtgagcatcgg
catgccttgcgagaaggcgctcgcgtcactgggcgacaacgggaccagcgcgatgtcgct
ctggagcgcgatcgtgaggagtttatgcaggagctggaacaggatccggagcttcgagcg
acggtgaatctgtacaaagatcccaccaagtttgtggaggatggtctcggacgacttggg
attcgctatcctggggatcggaagtggactgcatctgaacgagcacaaggtcagagtcga
cgaaatgttcagaatgcgaatcgtttcgacggacagcgtggaatgaatgcgtatgcggtg
cttgaagcagacacggatgcagaccagtctgacgactatcccagtgtgagtctcgatgag
ttgcttgatggcctcgatatatccgatgatgcggatcagggccaggatgcagtgactagt
tga

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