KEGG   Clavibacter michiganensis subsp. michiganensis: CMM_1358
Entry
CMM_1358          CDS       T00529                                 
Symbol
rncA
Name
(GenBank) ribonuclease III
  KO
K03685  ribonuclease III [EC:3.1.26.3]
Organism
cmi  Clavibacter michiganensis subsp. michiganensis
Brite
KEGG Orthology (KO) [BR:cmi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmi03019]
    CMM_1358 (rncA)
   03009 Ribosome biogenesis [BR:cmi03009]
    CMM_1358 (rncA)
   03036 Chromosome and associated proteins [BR:cmi03036]
    CMM_1358 (rncA)
Enzymes [BR:cmi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.3  ribonuclease III
     CMM_1358 (rncA)
Messenger RNA biogenesis [BR:cmi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CMM_1358 (rncA)
Ribosome biogenesis [BR:cmi03009]
 Eukaryotic type
  90S particles
   RNase
    CMM_1358 (rncA)
 Prokaryotic type
  rRNA processing factors
   CMM_1358 (rncA)
Chromosome and associated proteins [BR:cmi03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Microprocessor complex
     CMM_1358 (rncA)
SSDB
Motif
Pfam: Ribonucleas_3_3 Ribonuclease_3 dsrm DND1_DSRM
Other DBs
NCBI-ProteinID: CAN01403
UniProt: A5CQP9
Position
1537069..1537785
AA seq 238 aa
MTDTQGSRVHGDRDALRRLLAVDVSPELLELALTHRSYAYEHGGIPHNERLEFLGDSILG
QAVTVMLYLENPDLDEGELAKRRASLVSSVALAEVATRIGLGEHLLLGRGEELTGGRAKS
SILADTVEAIIGASYLDAGGEAATGLVLRLIAPLLEDPARFGAAMDPKTALQESAARQGL
PAPVYDVSDSGPDHSKRFHAVVTVGDAVRTTGEGSSKKQAEMTAALEAWTRLEARTTA
NT seq 717 nt   +upstreamnt  +downstreamnt
atgaccgacacccagggatcccgcgtccacggcgaccgcgacgcgctccggcgcctcctc
gccgtggacgtgagccccgagctcctcgagctcgcgctcacccaccgctcgtacgcgtac
gagcacggcggcatcccgcacaacgagcgcctcgagttcctcggcgactccatcctcggg
caggccgtcacggtcatgctctacctcgagaaccccgacctcgacgagggcgagctcgcc
aagcggcgcgccagcctcgtctcgagcgtcgccctcgcggaggtcgccacgcgcatcggg
ctcggcgagcacctgctgctcggacgcggcgaggagctcacgggcggccgtgcgaagtcg
tccatcctcgccgacacggtcgaggccatcatcggcgcctcgtacctcgacgccggggga
gaggccgcgaccggtctcgtgctgcgcctcatcgcaccgctcctcgaggaccccgcgcgc
ttcggcgccgcgatggacccgaagaccgcgctccaggagagcgccgcgcgccagggcctg
cctgcccccgtctacgacgtgagcgacagcggacccgaccacagcaagcgcttccacgcc
gtcgtcaccgtcggtgatgccgtccgcaccacgggcgagggatccagcaagaagcaggcc
gagatgacggccgcgctcgaggcgtggacgcgcctcgaggcgcgcaccacggcctga

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Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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