KEGG   Clavibacter michiganensis subsp. michiganensis: CMM_1663
Entry
CMM_1663          CDS       T00529                                 
Name
(GenBank) putative ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
cmi  Clavibacter michiganensis subsp. michiganensis
Brite
KEGG Orthology (KO) [BR:cmi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cmi03016]
    CMM_1663
Enzymes [BR:cmi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     CMM_1663
Transfer RNA biogenesis [BR:cmi03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    CMM_1663
SSDB
Motif
Pfam: DNA_pol_A_exo1 DNA_pol_A_exoN HRDC
Other DBs
NCBI-ProteinID: CAN01715
UniProt: A5CRK6
Position
complement(1885441..1886931)
AA seq 496 aa
MTAPSDTPDPDATGGDAPVPSTPAGLSRPAMGPSLFSDVPGSTATDAVVARSRTGTRRTA
AAPAAQPAPGSASGDTPALARVAETDAPAPKPLREAAATGDLTVIDTREEYLRAVEAIAA
GTGPIAVDAERASGFRYSQRAYLIQVFRRGAGTFLFDPPAVGGFSELDAVIRDVEWVLHA
ASQDLACLREVGLDPQRIFDTELASRLLGLPRVGLGTVVEELLGIHLAKEHSAADWSTRP
LPRAWLVYAALDVELLVDVRDEIARRLEEQGKTGIAEQEFAATIAKEAKPARVEPWRRLS
GLHGVRGGRNLAVAKELWEARDAYAREVDTSPGRLVPDGSLVAVARVLPQTKRDLAAVRE
FSGRASRSEIDRWWAAVERGLAATEFPQLRGTGETMPPPKAWADKDPAADRRLKRARVAV
QEVATAMGVPQENLLTPEVLRRVAWTPPDDLAPEAVATALESWGARPWQVEATAAPVAAA
FVDAGQADDVTDDGAS
NT seq 1491 nt   +upstreamnt  +downstreamnt
gtgaccgccccgtccgacacccccgaccccgacgcgaccggcggcgatgctcccgtcccg
tcgactcccgccggcctgagccgcccggccatgggcccgtccctgttctccgacgtgccg
ggatcaaccgccaccgacgcggtcgtcgcccggagccggacgggcacccggcggaccgcg
gccgccccggcggcccagccggcgcccggctccgcgtccggcgacacgcccgccctggcg
cgggtcgcggagaccgacgcccccgcgcccaagcccctccgtgaggccgccgcgacaggc
gacctcaccgtcatcgacacccgggaggagtacctccgcgccgtcgaggcgatcgcggcc
ggcaccggtcccatcgcggtcgacgccgagcgcgcgtcgggcttccgctacagccagcgt
gcgtacctcatccaggtgttccgccgcggggccggcacgttcctcttcgacccgcccgcg
gtgggcggcttctcggagctcgacgccgtgatccgcgacgtcgagtgggtgctgcacgcc
gcgagccaggacctcgcctgcctccgcgaggtgggcctcgacccgcagcgcatcttcgac
accgagctcgcctcgcgactcctcggcctgccccgcgtgggcctgggcacggtcgtggag
gagctgctcgggatccacctggccaaggagcactcggccgccgactggtcgacccgcccg
ctcccccgcgcctggctcgtctacgccgcgctcgacgtggagctgctcgtcgacgtgcgc
gacgagatcgcccgccgcctcgaggagcagggcaagaccggcatcgccgagcaggagttc
gccgcgaccatcgccaaggaggcgaagcccgcgcgggtggagccgtggcgtcgtctgagc
ggcctgcacggggtccgcggcggccgcaacctcgcggtcgcgaaggagctgtgggaggcc
cgcgacgcctacgcgcgcgaggtcgacacgagccccggacgcctcgtccccgacgggtcg
ctcgtcgcggtcgcgcgcgtcctgccgcagaccaagcgcgacctcgccgcggtgcgcgag
ttctcgggccgcgcgagccgcagcgagatcgaccgctggtgggccgccgtggagcggggc
ctcgccgcgaccgagttcccgcagctgcgcggcacgggcgagaccatgccgccgccgaag
gcgtgggccgacaaggaccccgccgccgaccgccgactcaagcgcgcccgcgtcgccgtc
caggaggtcgcgaccgcgatgggcgtgccgcaggagaacctgctcacgcccgaggtgctg
cgtcgcgtcgcgtggacgccgcccgacgacctcgcgcccgaggccgtcgcgacggccctc
gagtcctggggtgcgcgcccctggcaggtcgaggcgacggccgctccggtggcggcggcc
tttgtcgatgccggccaagccgacgacgtgaccgacgacggggcctcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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