KEGG   Cronobacter malonaticus LMG 23826: AFK66_001820
Entry
AFK66_001820      CDS       T04062                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
cmj  Cronobacter malonaticus LMG 23826
Pathway
cmj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cmj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AFK66_001820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmj03021]
    AFK66_001820
   03400 DNA repair and recombination proteins [BR:cmj03400]
    AFK66_001820
Enzymes [BR:cmj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AFK66_001820
Transcription machinery [BR:cmj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AFK66_001820
DNA repair and recombination proteins [BR:cmj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AFK66_001820
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD RNA_pol_L_2
Other DBs
NCBI-ProteinID: ALX77018
Position
234554..235543
AA seq 329 aa
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVVLTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq 990 nt   +upstreamnt  +downstreamnt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtgagt
tcgacgcacgccaaggtgacccttgagcctttagagcgtggctttggccatactctgggt
aacgcactgcgccgtattctgctttcatcgatgccgggttgcgcggtgaccgaggttgag
attgatggtgtactgcacgagtacagcaccaaagaaggcgttcaggaagatatcctggaa
atcctgctcaacctgaaagggctggcggtgagagttcagggtaaagatgaagtcgtactt
actctgaataaatctggcattggccctgtaaccgcagccgacatcacccatgatggtgat
gtcgaaatcgtcaagccgcagcatgtgatctgccacctgaccgatgaaaacgcatctatt
agcatgcgtatcaaagttcagcgcggccgtggttatgtgccggcgtctgcccgaattcat
tcggaagaagatgagcgcccaatcggccgtctgctggtcgacgcttgctacagccctgta
gaacgtattgcctacaatgttgaagcagcgcgtgtagaacagcgtaccgacctggacaag
ctggtcatcgaaatggaaaccaacggcacaatcgatcctgaagaggcgattcgtcgtgcg
gcgaccattctggcagaacaacttgaagctttcgttgacttacgtgatgtacgtcagccg
gaagttaaagaagagaaaccagaattcgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgccttaaggcagaagctatccactatatcggtgat
ctggtacagcgtaccgaggttgagctgctcaaaacgcctaaccttggtaaaaaatctctt
actgagattaaagacgtgctggcctcccgtggtctgtctctgggcatgcgcctggaaaac
tggccaccggcaagcattgctgacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system